Browse Element(s) Details


OsAffx.24743.1.S1_at

Description tigr:9630.m04447
TID=OsAffx.24743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4583010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45780Os.9558.1.S1_s_at11/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45780Os.14237.1.S1_at1/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45840OsAffx.24744.3.S1_at11/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45840OsAffx.16430.1.S1_at2/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45850Os.56351.1.S1_at11/112+27926962..27928820B3 DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24743.1.S1_at--31--7551Chr02:27907073..27907097 (25 bp)
GTGGCGTCAGCCCATACCACTAGAG
LOC_Os02g45830
OsAffx.24743.1.S1_at--576--5811NONE
TCGAAGCCCTCCTCGTAAACTGGTT
NONE
OsAffx.24743.1.S1_at--79--4011Chr02:27909282..27909305 (24 bp)
CGTAAACTGGTTCTTGCCTGACACT
LOC_Os02g45830
OsAffx.24743.1.S1_at--115--6751Chr02:27909360..27909384 (25 bp)
GTTCACTACGTGAATTTGCTGCCGG
LOC_Os02g45830
OsAffx.24743.1.S1_at--539--9931Chr02:27909366..27909390 (25 bp)
TACGTGAATTTGCTGCCGGTCGCCG
LOC_Os02g45830
OsAffx.24743.1.S1_at--777--7211Chr02:27909408..27909432 (25 bp)
GTCGATGGCGCCGCGAATTATTCCG
LOC_Os02g45830
OsAffx.24743.1.S1_at--788--5211Chr02:27909422..27909744 (25 bp)
GAATTATTCCGGCAAGGCATCACAG
LOC_Os02g45830
OsAffx.24743.1.S1_at--468--91Chr02:27909427..27909749 (25 bp)
ATTCCGGCAAGGCATCACAGCACAG
LOC_Os02g45830
OsAffx.24743.1.S1_at--450--5171Chr02:27909734..27909755 (22 bp)
GCAAGGCATCACAGCACAGGAAGCA
LOC_Os02g45830
OsAffx.24743.1.S1_at--552--9031Chr02:27909905..27909929 (25 bp)
TGCACGTGTGCCTAGAGGAGTTCTC
LOC_Os02g45830
OsAffx.24743.1.S1_at--626--4451Chr02:27909914..27909938 (25 bp)
GCCTAGAGGAGTTCTCCGCCGGCGA
LOC_Os02g45830
Target Sequence 
GTGGCGTCAGCCCATACCACTAGAGCACACCGTGCCCTCCCTGTGGCTCCCGCGATGCTCGAAGCCCTCCTCGTAAACTG
GTTCTTGCCTGACACTTGTCTTGTCCGGGTGGCCACCGTGGGGCAGCCTGGTGCCATGAGAAGGATCACCGTTCACTACG
TGAATTTGCTGCCGGTCGCCGGCGCCGGAGAAGCACACGTCGATGGCGCCGCGAATTATTCCGGCAAGGCATCACAGCAC
AGGAAGCATCAAGCTGAACAGAGCCAGCAGTGGAGGGGGGAGATCGACAGTGACGGCGGCGATGGGGGTGCAGAGGGCGG
TGTACTCGAAGAAAGGGGTGATGCGGCGGCTGATGCGGTGGAGTCGACTGCGGTGGGACGCGGCGGAGCAGGCGGAGTGC
ACGTGTGCCTAGAGGAGTTCTCCGCCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis