Browse Element(s) Details


OsAffx.24744.3.S1_at

Description tigr:9630.m04448
TID=OsAffx.24744.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4584011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed
LOC_Os02g45820Os.57549.1.S1_s_at2/112+27904023..27906068Mitochondrial import inner membrane translocase subunit Tim13, putative, expressed
LOC_Os02g45830OsAffx.24743.1.S1_at10/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.16187.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.27522.1.S1_x_at1/112+27907001..27910083expressed protein
LOC_Os02g45830OsAffx.3613.1.S1_at1/112+27907001..27910083expressed protein
LOC_Os02g45840OsAffx.24744.3.S1_at11/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45840OsAffx.16430.1.S1_at2/112+27916645..27917802retrotransposon protein, putative, unclassified
LOC_Os02g45850Os.56351.1.S1_at11/112+27926962..27928820B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24744.3.S1_at--502--6231Chr02:27916720..27916744 (25 bp)
GATGGCGATAGAATTGGCACCTACG
LOC_Os02g45840
OsAffx.24744.3.S1_at--252--5231Chr02:27916778..27916802 (25 bp)
GAATATGGCCCCAGTATCATCTCAT
LOC_Os02g45840
OsAffx.24744.3.S1_at--268--9431Chr02:27916840..27916864 (25 bp)
TCGGTGGCTAGGTCCCCAGATTTGA
LOC_Os02g45840
OsAffx.24744.3.S1_at--1023--1251Chr02:27916857..27916881 (25 bp)
AGATTTGACCTCAGGCAACGGCAAG
LOC_Os02g45840
OsAffx.24744.3.S1_at--593--3011Chr02:27916892..27916916 (25 bp)
AATGCTCCACTATTGTAACGTCCCG
LOC_Os02g45840
OsAffx.24744.3.S1_at--463--671Chr02:27917573..27917597 (25 bp)
ATGAAGAGCTTCAAGGGCCTCGTGA
LOC_Os02g45840
OsAffx.24744.3.S1_at--882--6971Chr02:27917594..27917618 (25 bp)
GTGAGGTAGGACTCCTCCTTGAACT
LOC_Os02g45840
OsAffx.24744.3.S1_at--564--7491Chr02:27917637..27917661 (25 bp)
GGGATTCCCTAGCAACAACGGCGAG
LOC_Os02g45840
OsAffx.24744.3.S1_at--721--6551Chr02:27917706..27917730 (25 bp)
GATTACTTCGTCTCCAGGTGGTGCT
LOC_Os02g45840
OsAffx.24744.3.S1_at--99--1051Chr02:27917721..27917745 (25 bp)
AGGTGGTGCTCTCCTTTGCGTTTTT
LOC_Os02g45840
OsAffx.24744.3.S1_at--363--10631Chr02:27917736..27917760 (25 bp)
TTGCGTTTTTGTCTTGGGATTTCTC
LOC_Os02g45840
Target Sequence 
GATGGCGATAGAATTGGCACCTACGCCAAATTCAGCGGGCCCAAGCTCAGGGGTCTCCGAATATGGCCCCAGTATCATCT
CATCTACCGCACCAAGAGGGGTTGCCATAACCACATCGCCTCGGTGGCTAGGTCCCCAGATTTGACCTCAGGCAACGGCA
AGACGCAACGTCAATGCTCCACTATTGTAACGTCCCGTCTTCCCCCAGGCCGGGCCCACTTACATCTGATAGCTTTCATA
GGCCAAGCACGCTTAACCCTGGAGTTCTTTGGAGATTGGCTTCCGGAAAAGAAGTTGCAACTTGTTGATATGAGTATTCT
ATTAATTCTATTAAGCCCTAGGCCGGGATGTTACAACTATGAAGAGCTTCAAGGGCCTCGTGAGGTAGGACTCCTCCTTG
AACTGGCCCCCTCCCTGTTGCGGGGATTCCCTAGCAACAACGGCGAGGACCTCAACTGCTCACCATCATCCAGCAACCAG
GCCCAAGGCCCGATTACTTCGTCTCCAGGTGGTGCTCTCCTTTGCGTTTTTGTCTTGGGATTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24744.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis