Browse Element(s) Details


Os.1313.1.S1_at

Description gb:U78782.1
DB_XREF= gi:2286108
GEN=OsMAD6
TID=Os.1313.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1313 (NCBI UniGene Cluster)
DEF=Oryza sativa MADS box protein (OsMADS6) mRNA, complete cds.
PROD=MADS box protein
FL= gb:U78782.1 gb:AK069103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4577011/11Agamous-like MADS box protein AGL6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45760Os.49702.1.S1_at11/112+27848001..27850160GRAS family transcription factor containing protein, expressed
LOC_Os02g45770Os.1313.1.S1_at11/112+27870110..27878201Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os02g45780Os.9558.1.S1_s_at11/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45780Os.14237.1.S1_at1/112+27881343..27882381Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g45790NANA2+27886218..27892335retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g45800Os.46995.1.S1_x_at3/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45800Os.46995.1.S1_at2/112+27892665..27895585retrotransposon protein, putative, unclassified
LOC_Os02g45810Os.49863.1.S1_at10/112+27900643..27903516TRANSPARENT TESTA GLABRA 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0048481biological_processovule development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1313.1.S1_at--531--5311Chr02:27877417..27877441 (25 bp)
GAAGGTTCCACCAGCAACTACAGAG
LOC_Os02g45770
Os.1313.1.S1_at--686--2531Chr02:27877432..27877456 (25 bp)
AACTACAGAGCCATGCAGCAAGCCT
LOC_Os02g45770
Os.1313.1.S1_at--220--571Chr02:27877732..27877756 (25 bp)
ATCCTCATCAATTTGTGCCTGCTGA
LOC_Os02g45770
Os.1313.1.S1_at--62--2471Chr02:27877800..27877824 (25 bp)
AACAACTTCATGCTGGGATGGGTTC
LOC_Os02g45770
Os.1313.1.S1_at--1061--7671Chr02:27877819..27877843 (25 bp)
GGGTTCTTTGAGCTAAGCAGCCATC
LOC_Os02g45770
Os.1313.1.S1_at--693--1511Chr02:27877834..27877858 (25 bp)
AGCAGCCATCGATCAGCTGTCAGAA
LOC_Os02g45770
Os.1313.1.S1_at--1153--7471Chr02:27877888..27877912 (25 bp)
GTGGGCTACATGTATCTCGGATCTC
LOC_Os02g45770
Os.1313.1.S1_at--8--9151Chr02:27877915..27877939 (25 bp)
TGCGAGCCACCTAATGGTCTTGCGT
LOC_Os02g45770
Os.1313.1.S1_at--542--4671Chr02:27877936..27877960 (25 bp)
GCGTGGCCCTTTAATCTGTATGTTT
LOC_Os02g45770
Os.1313.1.S1_at--1147--2691Chr02:27877969..27877993 (25 bp)
AAGCTACTGCTAGCTGTTTGCACCT
LOC_Os02g45770
Os.1313.1.S1_at--507--10691Chr02:27878007..27878031 (25 bp)
TTGTGTTTCCGTGCTACCTTTTTAT
LOC_Os02g45770
Target Sequence 
GAAGGTTCCACCAGCAACTACAGAGCCATGCAGCAAGCCTCCTGGGCTCAGGGCGCCGTGGTGGAGAATGGCGCCGCATA
CGTGCAGCCGCCGCCACACTCCGCGGCCATGGACTCTGAACCCACCTTGCAAATTGGGTATCCTCATCAATTTGTGCCTG
CTGAAGCAAACACTATTCAGAGGAGCACTGCCCCTGCAGGTGCAGAGAACAACTTCATGCTGGGATGGGTTCTTTGAGCT
AAGCAGCCATCGATCAGCTGTCAGAAGTTGGAGCTAATAATAAAAGGGATGTGGAGTGGGCTACATGTATCTCGGATCTC
TCTGCGAGCCACCTAATGGTCTTGCGTGGCCCTTTAATCTGTATGTTTTTGTGTGTAAGCTACTGCTAGCTGTTTGCACC
TTCTGCGTCCGTGGTTGTGTTTCCGTGCTACCTTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis