Browse Element(s) Details


Os.49702.1.S1_at

Description gb:AK120775.1
DB_XREF= gi:37990398
TID=Os.49702.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20145 scarecrow transcriptional regulator-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009G09, full insert sequence.
FL= gb:AY224426.1 gb:AK120775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4576011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45740NANA2+27825552..27826577hypothetical protein
LOC_Os02g45750OsAffx.24742.1.S1_x_at11/112+27831765..27835133Protein kinase domain containing protein, expressed
LOC_Os02g45750Os.55361.1.S1_x_at2/112+27831765..27835133Protein kinase domain containing protein, expressed
LOC_Os02g45760Os.49702.1.S1_at11/112+27848001..27850160GRAS family transcription factor containing protein, expressed
LOC_Os02g45770Os.1313.1.S1_at11/112+27870110..27878201Agamous-like MADS box protein AGL6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49702.1.S1_at--476--551Chr02:27848230..27848254 (25 bp)
ATCCGCCTGGCGTTAATCCACAAGG
LOC_Os02g45760
Os.49702.1.S1_at--228--6771Chr02:27848219..27848243 (25 bp)
GTTAATCCACAAGGTGAGCCCGCAT
LOC_Os02g45760
Os.49702.1.S1_at--303--1051Chr02:27848208..27848232 (25 bp)
AGGTGAGCCCGCATGCAGCATTATT
LOC_Os02g45760
Os.49702.1.S1_at--527--4951Chr02:27848191..27848215 (25 bp)
GCATTATTGCCGTGATCAAATCGAT
LOC_Os02g45760
Os.49702.1.S1_at--269--6471Chr02:27848165..27848189 (25 bp)
GATAAGCTTCTATTTTTAGCGTTTT
LOC_Os02g45760
Os.49702.1.S1_at--934--6931Chr02:27848124..27848148 (25 bp)
GTAGTGAACCTGTTCATACCCACCT
LOC_Os02g45760
Os.49702.1.S1_at--1065--3351Chr02:27848104..27848128 (25 bp)
CACCTCAGTTTACCTTAGCTGTCAT
LOC_Os02g45760
Os.49702.1.S1_at--224--10011Chr02:27848089..27848113 (25 bp)
TAGCTGTCATTAGCCTGCTACGTCA
LOC_Os02g45760
Os.49702.1.S1_at--529--1891Chr02:27848070..27848094 (25 bp)
ACGTCAGGTAATTTCTTGATCGCTT
LOC_Os02g45760
Os.49702.1.S1_at--506--10751Chr02:27848055..27848079 (25 bp)
TTGATCGCTTTTAAAGTACTGCACT
LOC_Os02g45760
Os.49702.1.S1_at--815--6991Chr02:27848040..27848064 (25 bp)
GTACTGCACTACTGCTAGAACTGAT
LOC_Os02g45760
Target Sequence 
ATCCGCCTGGCGTTAATCCACAAGGTGAGCCCGCATGCAGCATTATTGCCGTGATCAAATCGATTGATAAGCTTCTATTT
TTAGCGTTTTTCTCCTTTGGTAAGGAGTAGTGAACCTGTTCATACCCACCTCAGTTTACCTTAGCTGTCATTAGCCTGCT
ACGTCAGGTAATTTCTTGATCGCTTTTAAAGTACTGCACTACTGCTAGAACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis