Browse Element(s) Details


Os.55361.1.S1_x_at

Description gb:AK107942.1
DB_XREF= gi:32993151
TID=Os.55361.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B02, full insert sequence.
FL= gb:AK107942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3802011/11expressed protein
LOC_Os02g457502/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37970Os.5299.2.S1_a_at11/115+22193096..22195540universal stress protein family protein, expressed
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55361.1.S1_x_at--184--7631Chr05:22216487..22216511 (25 bp)
GGGACGAGACCCACGAGGCGGCGAC
LOC_Os05g38020
Os.55361.1.S1_x_at--501--4551Chr05:22216584..22216608 (25 bp)
GCCCAATGCATACTCGCCTATGCAG
LOC_Os05g38020
Os.55361.1.S1_x_at--170--331Chr05:22216593..22216617 (25 bp)
ATACTCGCCTATGCAGTACCAGATC
LOC_Os05g38020
Os.55361.1.S1_x_at--492--10134Chr09:8258227..8258388 (25 bp)
TATGCAGTACCAGATCAACGCCGGC
NONE
Os.55361.1.S1_x_at--579--9691Chr05:22216616..22216640 (25 bp)
TCAACGCCGGCGACACCTTTTGGAT
LOC_Os05g38020
Os.55361.1.S1_x_at--620--8371Chr05:22216624..22216648 (25 bp)
GGCGACACCTTTTGGATCGTCTCCA
LOC_Os05g38020
Os.55361.1.S1_x_at--1135--9211Chr05:22216645..22216669 (25 bp)
TCCACCACCAAGCTGCAGAACTTGA
LOC_Os05g38020
Os.55361.1.S1_x_at--81--2511Chr05:22216663..22216687 (25 bp)
AACTTGAAGCAGTACCAGGCCGTCG
LOC_Os05g38020
Os.55361.1.S1_x_at--373--9373Chr05:22216685..22216709 (25 bp)
TCGAGCGGGTGAACCCCACGCTGGT
LOC_Os05g38020
Os.55361.1.S1_x_at--462--8591Chr05:22216706..22216730 (25 bp)
TGGTACCCACCAACCTCGGCATTGG
LOC_Os05g38020
Os.55361.1.S1_x_at--356--8291Chr05:22216723..22216747 (25 bp)
GGCATTGGCCAGATCGACATGTTCC
LOC_Os05g38020
Target Sequence 
GGGACGAGACCCACGAGGCGGCGACGGGGGAGGGCTACGCGCGGGCGGCGGGGCAGCCGCTGCTGGTGCCGCTCAAGTGC
GGGTGCCCCTCCCGCTCGCCCAATGCATACTCGCCTATGCAGTACCAGATCAACGCCGGCGACACCTTTTGGATCGTCTC
CACCACCAAGCTGCAGAACTTGAAGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTACCCACCAACCTCGGCA
TTGGCCAGATCGACATGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55361.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis