Browse Element(s) Details


OsAffx.28048.3.S1_at

Description tigr:9633.m03525
TID=OsAffx.28048.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3807011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein
LOC_Os05g38080OsAffx.15005.1.S1_at9/115+22248438..22249311hypothetical protein
LOC_Os05g38090OsAffx.15006.1.S1_at10/115+22251363..22252117hypothetical protein
LOC_Os05g38100NANA5+22255355..22261306retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28048.3.S1_at--893--7631Chr05:22234822..22234846 (25 bp)
GGGAGGTCCGGCAGCGGACGCTACA
LOC_Os05g38070
OsAffx.28048.3.S1_at--881--5791Chr05:22234806..22234830 (25 bp)
GACGCTACAGCGGAAGCTCATCAAG
LOC_Os05g38070
OsAffx.28048.3.S1_at--734--9451Chr05:22234741..22234765 (25 bp)
TCGGCCTTCTCGAGACACCGTGGAT
LOC_Os05g38070
OsAffx.28048.3.S1_at--320--3651Chr05:22234736..22234760 (25 bp)
CTTCTCGAGACACCGTGGATCCGGA
LOC_Os05g38070
OsAffx.28048.3.S1_at--554--9511Chr05:22234734..22234758 (25 bp)
TCTCGAGACACCGTGGATCCGGAAG
LOC_Os05g38070
OsAffx.28048.3.S1_at--537--5611Chr05:22234637..22234661 (25 bp)
GACAAGGATGAACCACAGGTTCGCG
LOC_Os05g38070
OsAffx.28048.3.S1_at--219--991Chr05:22234633..22234657 (25 bp)
AGGATGAACCACAGGTTCGCGACGC
LOC_Os05g38070
OsAffx.28048.3.S1_at--415--671Chr05:22234630..22234654 (25 bp)
ATGAACCACAGGTTCGCGACGCGGG
LOC_Os05g38070
OsAffx.28048.3.S1_at--712--3931Chr05:22234582..22234606 (25 bp)
CGGCTGGAGGCGCTTGCTACGGGCG
LOC_Os05g38070
OsAffx.28048.3.S1_at--765--3491Chr05:22234433..22234457 (25 bp)
CATGGAGTACCGGTTGGTCTGTAGC
LOC_Os05g38070
OsAffx.28048.3.S1_at--630--7911Chr05:22234422..22234446 (25 bp)
GGTTGGTCTGTAGCGAGGAGCTCCG
LOC_Os05g38070
Target Sequence 
GGGAGGTCCGGCAGCGGACGCTACAGCGGAAGCTCATCAAGATGCTGCTCGACCCCAACCCGGGAACCCGCATCACCGTC
CTCGGCCTTCTCGAGACACCGTGGATCCGGAAGACGGCGCCCGTCCCGCGCCCCAGCGCCGACCCCGTGCCGACGCCGGT
GGACACGCATGGCAATGCCGGCGACGACAAGGATGAACCACAGGTTCGCGACGCGGGAGGCGGCAAGCGGCGTGGTCGCG
CGGCTGGAGGCGCTTGCTACGGGCGGCGCCACGCCCACGCGCGTGACGAGGAGCGGTGCGCGCGGGGTGCGGCTCGCCGT
GGCGGCCGACGTCTTCAGCGTGGCGCCATCGTTGCTCGTGGTGGACGTCAAGAAGGATGGCGGCGACGCCATGGAGTACC
GGTTGGTCTGTAGCGAGGAGCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28048.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis