Browse Element(s) Details


OsAffx.15005.1.S1_at

Description tigr:9633.m03526
TID=OsAffx.15005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g380809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein
LOC_Os05g38080OsAffx.15005.1.S1_at9/115+22248438..22249311hypothetical protein
LOC_Os05g38090OsAffx.15006.1.S1_at10/115+22251363..22252117hypothetical protein
LOC_Os05g38100NANA5+22255355..22261306retrotransposon protein, putative, unclassified
LOC_Os05g38110Os.28943.1.S1_x_at4/115+22261925..22264978retrotransposon protein, putative, unclassified
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15005.1.S1_at--102--7571Chr05:22249255..22249279 (25 bp)
GGGCCTGCGTGTCACGAGAAACCCC
LOC_Os05g38080
OsAffx.15005.1.S1_at--511--7451Chr05:22249247..22249271 (25 bp)
GTGTCACGAGAAACCCCGCATGCAT
LOC_Os05g38080
OsAffx.15005.1.S1_at--136--1431Chr05:22249239..22249263 (25 bp)
AGAAACCCCGCATGCATGCGCGCGG
LOC_Os05g38080
OsAffx.15005.1.S1_at--710--5771Chr05:22249179..22249203 (25 bp)
GACGATGAGGCCATTGATGGTCGCC
LOC_Os05g38080
OsAffx.15005.1.S1_at--163--891Chr05:22249172..22249196 (25 bp)
AGGCCATTGATGGTCGCCGATGCAT
LOC_Os05g38080
OsAffx.15005.1.S1_at--797--6251Chr05:22249164..22249188 (25 bp)
GATGGTCGCCGATGCATCGCTGGAA
LOC_Os05g38080
OsAffx.15005.1.S1_at--732--4231Chr05:22249156..22249180 (25 bp)
CCGATGCATCGCTGGAAGACTGGGA
LOC_Os05g38080
OsAffx.15005.1.S1_at--928--5011Chr05:22249130..22249154 (25 bp)
GCAGTGAGCCGGTGAACGTGACTCA
LOC_Os05g38080
OsAffx.15005.1.S1_at--864--5451NONE
GAACGTGACTCATTCCTTACGTGGT
NONE
OsAffx.15005.1.S1_at--609--5711NONE
GACTCATTCCTTACGTGGTCGATAT
NONE
OsAffx.15005.1.S1_at--682--9931Chr05:22248469..22248493 (25 bp)
TACGTGGTCGATATCAACAGCTATA
LOC_Os05g38080
Target Sequence 
GGGCCTGCGTGTCACGAGAAACCCCGCATGCATGCGCGCGGCGTACGTTCGTGGCGTCGGCATGCGGCGCAAGGAGGACG
ATGAGGCCATTGATGGTCGCCGATGCATCGCTGGAAGACTGGGAGGCAGTGAGCCGGTGAACGTGACTCATTCCTTACGT
GGTCGATATCAACAGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis