Browse Element(s) Details


Os.27308.1.S1_at

Description gb:AK063788.1
DB_XREF= gi:32973806
TID=Os.27308.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E02, full insert sequence.
FL= gb:AK063788.1 gb:AK100916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3812011/11homeodomain protein JUBEL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38080OsAffx.15005.1.S1_at9/115+22248438..22249311hypothetical protein
LOC_Os05g38090OsAffx.15006.1.S1_at10/115+22251363..22252117hypothetical protein
LOC_Os05g38100NANA5+22255355..22261306retrotransposon protein, putative, unclassified
LOC_Os05g38110Os.28943.1.S1_x_at4/115+22261925..22264978retrotransposon protein, putative, unclassified
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27308.1.S1_at--288--9811Chr05:22274875..22274899 (25 bp)
TAACCGAGCTTACATTGCTGAGCCC
LOC_Os05g38120
Os.27308.1.S1_at--126--431Chr05:22274922..22274946 (25 bp)
ATCTTGCCCATCGTTTCGGACTGGA
LOC_Os05g38120
Os.27308.1.S1_at--414--10071Chr05:22274953..22274977 (25 bp)
TAGTGATGCCTACGTGATGAGCTCA
LOC_Os05g38120
Os.27308.1.S1_at--675--3471Chr05:22274987..22275011 (25 bp)
CAGGACCGGCATTTCACCAAGGAGA
LOC_Os05g38120
Os.27308.1.S1_at--776--1272Chr05:22275009..22275033 (25 bp)
AGATCGGTGGCCATTTGCTCCATGA
LOC_Os05g38120
Os.27308.1.S1_at--970--1371Chr05:22275241..22275265 (25 bp)
AGACCTGTTTGTAGTGTTGTTCCCT
LOC_Os05g38120
Os.27308.1.S1_at--201--6651Chr05:22275256..22275280 (25 bp)
GTTGTTCCCTATTTGTTCTGATCCG
LOC_Os05g38120
Os.27308.1.S1_at--904--3851Chr05:22275273..22275297 (25 bp)
CTGATCCGCGGTTAAGCCGTGTTAA
LOC_Os05g38120
Os.27308.1.S1_at--634--7411Chr05:22275291..22275315 (25 bp)
GTGTTAACCCTGTACTATTCATCTG
LOC_Os05g38120
Os.27308.1.S1_at--532--6671Chr05:22275329..22275353 (25 bp)
GTTGCTCCCACTCTGGCAAATAAAG
LOC_Os05g38120
Os.27308.1.S1_at--492--7711Chr05:22275353..22275377 (25 bp)
GGGTGCTCAGTTAATTTGTCGCCAG
LOC_Os05g38120
Target Sequence 
TAACCGAGCTTACATTGCTGAGCCCCTTCCGGCCGCGCTTCCGCTCAATCTTGCCCATCGTTTCGGACTGGAGGACGTTA
GTGATGCCTACGTGATGAGCTCATTTGGTGGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTGCTCCATGAC
TTTGTTGGTTGAAGAGCAGATATGATTGTTTCACCAAGGAGATCGGTGGTGATTATTGTAGGATGCAGATGTATGATCTA
CCTATATTGTAGTTGGAAGTAGGAGGTGAAGAAAAGAGGGGCATTGGCACGCCTGTCGTAGATCCACGAATGCTTGTCGA
TATTTGACATTGTGGGGCTATAGAGAGCATATGACTATACCTTTGAAGACCTGTTTGTAGTGTTGTTCCCTATTTGTTCT
GATCCGCGGTTAAGCCGTGTTAACCCTGTACTATTCATCTGACTTGCAAATGTGGTTGCTCCCACTCTGGCAAATAAAGG
GTGCTCAGTTAATTTGTCGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis