Browse Element(s) Details


OsAffx.15006.1.S1_at

Description tigr:9633.m03527
TID=OsAffx.15006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3809010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein
LOC_Os05g38080OsAffx.15005.1.S1_at9/115+22248438..22249311hypothetical protein
LOC_Os05g38090OsAffx.15006.1.S1_at10/115+22251363..22252117hypothetical protein
LOC_Os05g38100NANA5+22255355..22261306retrotransposon protein, putative, unclassified
LOC_Os05g38110Os.28943.1.S1_x_at4/115+22261925..22264978retrotransposon protein, putative, unclassified
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15006.1.S1_at--1031--8391Chr05:22251639..22251663 (25 bp)
TGGCCCACAAACCAAAAGCTCCGAT
LOC_Os05g38090
OsAffx.15006.1.S1_at--472--2431Chr05:22251626..22251650 (25 bp)
AAAAGCTCCGATAGCAAATCCGTTA
LOC_Os05g38090
OsAffx.15006.1.S1_at--255--1591Chr05:22251623..22251647 (25 bp)
AGCTCCGATAGCAAATCCGTTAATG
LOC_Os05g38090
OsAffx.15006.1.S1_at--295--10011Chr05:22251615..22251639 (25 bp)
TAGCAAATCCGTTAATGGTTACAAC
LOC_Os05g38090
OsAffx.15006.1.S1_at--919--9831Chr05:22251596..22251620 (25 bp)
TACAACGCCGTCCAAAAGGAAGACA
LOC_Os05g38090
OsAffx.15006.1.S1_at--695--1811Chr05:22251592..22251616 (25 bp)
ACGCCGTCCAAAAGGAAGACATCTA
LOC_Os05g38090
OsAffx.15006.1.S1_at--791--8191Chr05:22251579..22251603 (25 bp)
GGAAGACATCTATTATGCCTTTAAT
LOC_Os05g38090
OsAffx.15006.1.S1_at--707--151Chr05:22251568..22251592 (25 bp)
ATTATGCCTTTAATAAGTGAGGATA
LOC_Os05g38090
OsAffx.15006.1.S1_at--98--2411Chr05:22251544..22251568 (25 bp)
AAACATGGCAAAATGGTGACAGTGA
LOC_Os05g38090
OsAffx.15006.1.S1_at--859--3271NONE
CAAAATGGTGACAGTGATTGACGAT
NONE
OsAffx.15006.1.S1_at--888--7391Chr05:22251410..22251547 (25 bp)
GTGATTGACGATAAATTTGGTGACG
LOC_Os05g38090
Target Sequence 
TGGCCCACAAACCAAAAGCTCCGATAGCAAATCCGTTAATGGTTACAACGCCGTCCAAAAGGAAGACATCTATTATGCCT
TTAATAAGTGAGGATAAACATGGCAAAATGGTGACAGTGATTGACGATAAATTTGGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis