Browse Element(s) Details


OsAffx.27218.1.S1_at

Description tigr:9633.m03531
TID=OsAffx.27218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g381309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38100NANA5+22255355..22261306retrotransposon protein, putative, unclassified
LOC_Os05g38110Os.28943.1.S1_x_at4/115+22261925..22264978retrotransposon protein, putative, unclassified
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27218.1.S1_at--220--911Chr05:22284699..22284723 (25 bp)
AGGCGGCAATGCTGGATCTAGCGCC
LOC_Os05g38130
OsAffx.27218.1.S1_at--883--8211Chr05:22284695..22284719 (25 bp)
GGCAATGCTGGATCTAGCGCCCCTG
LOC_Os05g38130
OsAffx.27218.1.S1_at--774--3011Chr05:22284692..22284716 (25 bp)
AATGCTGGATCTAGCGCCCCTGCCA
LOC_Os05g38130
OsAffx.27218.1.S1_at--319--10051Chr05:22284648..22284672 (25 bp)
TAGATCCGGCCTCCCCAATGCGAGA
LOC_Os05g38130
OsAffx.27218.1.S1_at--844--3911Chr05:22284642..22284666 (25 bp)
CGGCCTCCCCAATGCGAGAGGACGG
LOC_Os05g38130
OsAffx.27218.1.S1_at--131--5791Chr05:22284613..22284637 (25 bp)
GACGACGAGCCTCTGGCGAGTGGAG
LOC_Os05g38130
OsAffx.27218.1.S1_at--5--5631Chr05:22284580..22284604 (25 bp)
GACAACTGCATCATGGTGCTGCGCG
LOC_Os05g38130
OsAffx.27218.1.S1_at--742--2551Chr05:22284577..22284601 (25 bp)
AACTGCATCATGGTGCTGCGCGCGG
LOC_Os05g38130
OsAffx.27218.1.S1_at--678--5051Chr05:22284555..22284574 (20 bp)
GCAGCGTCAACGAGCCTCCGAATGA
LOC_Os05g38130
OsAffx.27218.1.S1_at--286--7091NONE
GTCAACGAGCCTCCGAATGAAGAAT
NONE
OsAffx.27218.1.S1_at--654--1851NONE
ACGAGCCTCCGAATGAAGAATGAGT
NONE
Target Sequence 
AGGCGGCAATGCTGGATCTAGCGCCCCTGCCAGATCTGGCCCCTTCCCGCCTAGATCCGGCCTCCCCAATGCGAGAGGAC
GGCCGCGACGACGAGCCTCTGGCGAGTGGAGCTGTGGGCGACAACTGCATCATGGTGCTGCGCGCGGGGGCAGCGTCAAC
GAGCCTCCGAATGAAGAATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis