Browse Element(s) Details


Os.4768.1.S1_at

Description gb:AK060152.1
DB_XREF= gi:32970170
TID=Os.4768.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E07, full insert sequence.
FL= gb:AK060152.1 gb:AK103269.1 gb:AK105995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3816011/11prenylated rab acceptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4768.1.S1_at--631--3171Chr05:22303610..22303726 (25 bp)
CAATAACCCCTGTTCTTCGTGGTAG
LOC_Os05g38160
Os.4768.1.S1_at--829--1751Chr05:22303763..22303787 (25 bp)
ACCTCGCTGGCTATTTGTGCTGTTA
LOC_Os05g38160
Os.4768.1.S1_at--606--9051Chr05:22303919..22303943 (25 bp)
TGCAGTCTCCTCACAGTTCTATGGG
LOC_Os05g38160
Os.4768.1.S1_at--880--7551Chr05:22303941..22303964 (24 bp)
GGGCCCTTTTAATTGCTATCTTTGC
LOC_Os05g38160
Os.4768.1.S1_at--262--2551Chr05:22304055..22304079 (25 bp)
AACTCTGCTTCATGCTAGCTTCAGA
LOC_Os05g38160
Os.4768.1.S1_at--938--4891Chr05:22304317..22304341 (25 bp)
GCTTAGTGCTGAAACTTCGTGCTGT
LOC_Os05g38160
Os.4768.1.S1_at--572--931Chr05:22304389..22304413 (25 bp)
AGGCAGCTGCGTTCTATTGTGATTA
LOC_Os05g38160
Os.4768.1.S1_at--592--31Chr05:22304404..22304428 (25 bp)
ATTGTGATTACTTGCTCGTTTTGGA
LOC_Os05g38160
Os.4768.1.S1_at--523--1031Chr05:22304428..22304452 (25 bp)
AGGTGGGCCTTGACTGTCTAAGTAC
LOC_Os05g38160
Os.4768.1.S1_at--536--711Chr05:22304456..22304480 (25 bp)
ATGATGTTACACTTGGTACGCCACC
LOC_Os05g38160
Os.4768.1.S1_at--22--851Chr05:22304505..22304529 (25 bp)
ATGGAATTCTCCCTAACCAAGCATT
LOC_Os05g38160
Target Sequence 
CAATAACCCCTGTTCTTCGTGGTAGACCAAGTTCAAAGAGGTCGATTCATATTTGTGGGCGACCTCGCTGGCTATTTGTG
CTGTTATTTTCTGCAGTTAGTTGCATGCTCTGGTTGACTTCCTGCAGTCTCCTCACAGTTCTATGGGCCCTTTTAATTGC
TATCTTTGCAACTCTGCTTCATGCTAGCTTCAGAACACCTAATCTGAAAGCACGTCTGAATACATTCAGAGAAGAATTCC
GAGCTGTTTGGAGGAATTATAGTGAGCTTTAAGGTTCATGTGGTAAGAAGTGCTTAGTGCTGAAACTTCGTGCTGTTTGT
GAATTGTGTTTGTGGGAGATACCAAGATATGAACAATGGTGACAGGCAGCTGCGTTCTATTGTGATTACTTGCTCGTTTT
GGAGGTGGGCCTTGACTGTCTAAGTACATGATGATGTTACACTTGGTACGCCACCTTCCAAATCACTATAATTGTTCACA
TGGAATTCTCCCTAACCAAGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis