Browse Element(s) Details


Os.7452.1.S1_at

Description gb:AK068616.1
DB_XREF= gi:32978633
TID=Os.7452.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156J23, full insert sequence.
FL= gb:AK106126.1 gb:AK068616.1 gb:AK061843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3823011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7452.1.S1_at--997--51Chr05:22327346..22327370 (25 bp)
ATTGACGTCTATGACTGGTCCATCC
LOC_Os05g38230
Os.7452.1.S1_at--373--971Chr05:22327318..22327342 (25 bp)
AGGACCTGTTCATCAAGCTCTCTGA
LOC_Os05g38230
Os.7452.1.S1_at--957--8051Chr05:22327147..22327171 (25 bp)
GGAGAATTCTGGACTCACCCGGAAG
LOC_Os05g38230
Os.7452.1.S1_at--723--3351Chr05:22327132..22327156 (25 bp)
CACCCGGAAGGCGTCTACAAATCAA
LOC_Os05g38230
Os.7452.1.S1_at--901--8111Chr05:22327064..22327088 (25 bp)
GGACTGAAGTTTGCTTTCTTCGTGT
LOC_Os05g38230
Os.7452.1.S1_at--941--2371Chr05:22327032..22327056 (25 bp)
AAACTGGAAACTGCCATTGCTGCAA
LOC_Os05g38230
Os.7452.1.S1_at--465--3591Chr05:22326949..22326973 (25 bp)
CATTTTGCTGGTACTGGCGTGTATT
LOC_Os05g38230
Os.7452.1.S1_at--274--8211Chr05:22326912..22326936 (25 bp)
GGAATCCAGAATCTTTACCGGCAAA
LOC_Os05g38230
Os.7452.1.S1_at--850--7991Chr05:22326836..22326860 (25 bp)
GGATGTAGTTTGACGTCTGCTTTCT
LOC_Os05g38230
Os.7452.1.S1_at--139--9091Chr05:22326809..22326833 (25 bp)
TGCTCACTCGCTCAGTTCCTTAGTA
LOC_Os05g38230
Os.7452.1.S1_at--1060--3811Chr05:22326782..22326806 (25 bp)
CTGCGATACGTTTTTCCTAGGTGTA
LOC_Os05g38230
Target Sequence 
ATTGACGTCTATGACTGGTCCATCCCGGAGGACCTGTTCATCAAGCTCTCTGAAATCGAGCAGATGAAGCTGATCCGTGG
AGAATTCTGGACTCACCCGGAAGGCGTCTACAAATCAATCGAAGAGCTTTGGGATGGCGAAATCTAATGATCGACTTGGC
TGGACTGAAGTTTGCTTTCTTCGTGTGGGTGAAAAACTGGAAACTGCCATTGCTGCAAATAAAGTGGGGAAATGTTAATC
AATGAATGAATAAAAGGANTTTAAGTCTACAGCTACCATTTTGCTGGTACTGGCGTGTATTTTTACAAGAACCGGAATCC
AGAATCTTTACCGGCAAAATTATCAGTAATTTGGACATTTGTTTAAAAGAAGGCTTTATCACAGATTTTGGATGTAGTTT
GACGTCTGCTTTCTTCTGCTCACTCGCTCAGTTCCTTAGTANCCTGCGATACGTTTTTCCTAGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis