Browse Element(s) Details


Os.54252.1.S1_at

Description gb:AK102806.1
DB_XREF= gi:32988015
TID=Os.54252.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108H24, full insert sequence.
FL= gb:AK102806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g382005/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54252.1.S1_at--539--1511Chr05:22320020..22320042 (23 bp)
AGCAGGAACTGAAATCTCTTGGTAG
LOC_Os05g38200
Os.54252.1.S1_at--36--9591Chr05:22320121..22320141 (21 bp)
TCTTGGTAGTGGTACTTATCCCCGT
LOC_Os05g38200
Os.54252.1.S1_at--778--10411Chr05:22320132..22320156 (25 bp)
TTATCCCCGTGGAATTTCTTCGGTG
LOC_Os05g38200
Os.54252.1.S1_at--332--4871Chr05:22320251..22320275 (25 bp)
GCTAGTGCTGCAGTTCTCCAATTTG
LOC_Os05g38200
Os.54252.1.S1_at--299--9211Chr05:22320267..22320291 (25 bp)
TCCAATTTGCTGTGGCACTGTTCAT
LOC_Os05g38200
Os.54252.1.S1_at--807--9491NONE
TCTCCTTTTACCTTTTGGCGACTAG
NONE
Os.54252.1.S1_at--335--8471NONE
TGGCGACTAGATACCATAGCACCAA
NONE
Os.54252.1.S1_at--633--1931NONE
ACGGACCGTGCCTTTATGAATGTGA
NONE
Os.54252.1.S1_at--193--5851Chr05:22320615..22320639 (25 bp)
GACCTTGTGTTTTGTTCATTTCTAA
NONE
Os.54252.1.S1_at--797--7871Chr05:22320641..22320665 (25 bp)
GGTTTTTTACTCATCTAGTTCCAAG
NONE
Os.54252.1.S1_at--817--3411Chr05:22320688..22320712 (25 bp)
CAGAATTGCCGAGTGTCATCTAAAT
NONE
Target Sequence 
AGCAGGAACTGAAATCTCTTGGTAGTGGTACTTATCCCCGTGGAATTTCTTCGGTGGGTCATCATAATCCTTCTTGGTGG
TGCTTCATCTTGGGTCATCTCCTTAAACTTGAAGGAATGCACTGAAGGAGCGGATATGATGGTTTTGATTGCTAGTGCTG
CAGTTCTCCAATTTGCTGTGGCACTGTTCATCAAAGTTTTCTTTTTCGCCTGAGATTGTCTTTTTTGGTGTTGCTCAGGT
CTGCCTCTCCTTTTACCTTTTGGCGACTAGATACCATAGCACCAAAAACCTTCCCAACAGTACACGGACCGTGCCTTTAT
GAATGTGAGCTTGATGTTTTGTCTGCTCCCATCATTCTGTTCTGGCGAGCATCCTTTTGAGGACCAAGTGGACTAGTTTT
ACTTGACATACATATTAACACTAGATTGATAGACCTTGTGTTTTGTTCATTTCTAAGGGTTTTTTACTCATCTAGTTCCA
AGAACTTCACTGTATATTCCAATTCAGAATTGCCGAGTGTCATCTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis