Browse Element(s) Details


Os.35939.1.S1_at

Description gb:AK064864.1
DB_XREF= gi:32974882
TID=Os.35939.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I06, full insert sequence.
FL= gb:AK064864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3818011/11Yip1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35939.1.S1_at--1040--4511Chr05:22312975..22312999 (25 bp)
GCCGCAGTGCCTGCTATATTCTTTT
LOC_Os05g38180
Os.35939.1.S1_at--801--8771Chr05:22313003..22313027 (25 bp)
TGTTTCAGTATTTTGGATCACGCCC
LOC_Os05g38180
Os.35939.1.S1_at--292--331Chr05:22313058..22313082 (25 bp)
ATACTCTCTGTTTATCTTCATCCCA
LOC_Os05g38180
Os.35939.1.S1_at--1085--10531Chr05:22313074..22313264 (25 bp)
TTCATCCCAGCATCTGTACTGTTAC
LOC_Os05g38180
Os.35939.1.S1_at--735--6991Chr05:22313255..22313279 (25 bp)
GTACTGTTACTTATTCCTGTGGAAT
LOC_Os05g38180
Os.35939.1.S1_at--1097--9251Chr05:22313269..22313293 (25 bp)
TCCTGTGGAATTTCTTCGATGGGTC
LOC_Os05g38180
Os.35939.1.S1_at--339--4871Chr05:22313384..22313408 (25 bp)
GCTAGTGCTGCAGTGCTCCAGTTTA
LOC_Os05g38180
Os.35939.1.S1_at--495--9231Chr05:22313400..22313424 (25 bp)
TCCAGTTTACTCTGGCACTGTTCAT
LOC_Os05g38180
Os.35939.1.S1_at--562--10371Chr05:22313774..22313798 (25 bp)
TTTTACTCCTTTAGTTCACAGAACT
LOC_Os05g38180
Os.35939.1.S1_at--1119--5471Chr05:22313794..22313818 (25 bp)
GAACTTCACTGTATGTTTCAATTCG
LOC_Os05g38180
Os.35939.1.S1_at--14--3871Chr05:22313825..22313849 (25 bp)
CTGAGTTTGTCATCTAAAATTGCAT
LOC_Os05g38180
Target Sequence 
GCCGCAGTGCCTGCTATATTCTTTTTCCTGTTTCAGTATTTTGGATCACGCCCAAGCCTTGTTCGGTTTTGGTGCATGTG
GGGATACTCTCTGTTTATCTTCATCCCAGCATCTGTACTGTTACTTATTCCTGTGGAATTTCTTCGATGGGTCATCATAA
TCCTTGTTGGTGGTGCTTCATCTTGGTTCATCTCCTTAAACTTAAAGGAATGTACTGAGGGAGCTGATATGATGGTTTTG
ATTGCTAGTGCTGCAGTGCTCCAGTTTACTCTGGCACTGTTCATCAAAGTTTTCTTTTTCGCCTGAGATTGTCTTTTGGT
GTTGCTCAGGTGAGCTTGATGTTTTGTCTGCTCCAATCATTCTGTTCTGGCGAGCATCCTTTTGAGGACCAAGCGGAGTA
GTTTTACTTGACATACATATTGACACTAGATTGATAGACCTTTGTGTTTTGTGTTCATGAGTTTTTTTTACTCCTTTAGT
TCACAGAACTTCACTGTATGTTTCAATTCGGNATTGCTGAGTTTGTCATCTAAAATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis