Browse Element(s) Details


Os.18091.1.S1_at

Description gb:AK058420.1
DB_XREF= gi:32968438
TID=Os.18091.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D08, full insert sequence.
FL= gb:AK058420.1 gb:AK102036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3821011/11Mitochondrial glycoprotein, expressed
LOC_Os05g281901/11RanBP1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18091.1.S1_at--487--9551Chr05:22321769..22321793 (25 bp)
TCTTACCCTAACGAACTCATCATTG
LOC_Os05g38210
Os.18091.1.S1_at--325--3591Chr05:22321749..22321773 (25 bp)
CATTGAGAGCTTGTCGTTTGAACCG
LOC_Os05g38210
Os.18091.1.S1_at--425--7411Chr05:22321711..22321735 (25 bp)
GTGATTCGGCCAGTCTTGAAGCTAA
LOC_Os05g38210
Os.18091.1.S1_at--132--6091Chr05:22321549..22321573 (25 bp)
GAGTAGGTGCATTTCGACTGATATT
LOC_Os05g38210
Os.18091.1.S1_at--132--9971Chr05:22321525..22321549 (25 bp)
TACCGACTTCTTACATGCGTACATG
LOC_Os05g38210
Os.18091.1.S1_at--775--4431Chr05:22321413..22321437 (25 bp)
GCCATCTTGTACTTTTCGTAGTTTG
LOC_Os05g38210
Os.18091.1.S1_at--734--10052Chr05:22321395..22321419 (25 bp)
TAGTTTGGCCATGTTTCTTTTCCTT
LOC_Os05g38210
Os.18091.1.S1_at--280--10311Chr05:22321360..22321384 (25 bp)
TTTCACCGGGTTTAGATGTGCCCAA
LOC_Os05g38210
Os.18091.1.S1_at--663--3191Chr05:22321280..22321304 (25 bp)
CAATGACCAGTATTGCAGCCTTCCG
LOC_Os05g38210
Os.18091.1.S1_at--1019--9031Chr05:22321267..22321291 (25 bp)
TGCAGCCTTCCGCTAATAACTGTGA
LOC_Os05g38210
Os.18091.1.S1_at--642--8811Chr05:22321123..22321147 (25 bp)
TGTTGTTCTGCTCCAATCCTAGCAA
LOC_Os05g38210
Target Sequence 
TCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAGTCTTGAAGC
TAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTTGAAGAGTAGGTGCATTTCGACTGATATTA
CCGACTTCTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATT
AAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTC
TGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTTATCTTGACCAGTTTTGATTAG
CAGCAATGACCAGTATTGCAGCCTTCCGCTAATAACTGTGACCNGGAGGCATTGCTGGTTGCTGCTAGCCTGCTACTCAC
TCACAACACGTCACATTTGATGGGATCTATGACGATCATGCAATTCGCTACAAAGATTTCACCTATGATATGTAAACTTT
TGTTGTTCTGCTCCAATCCTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis