Browse Element(s) Details


Os.12281.1.S1_at

Description gb:D49714.1
DB_XREF= gi:2081611
GEN=OSP5CS
TID=Os.12281.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12281 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for deltal-pyrroline-5-carboxylate synthetase, complete cds.
PROD=deltal-pyrroline-5-carboxylate synthetase
FL= gb:AK102633.1 gb:AY574031.1 gb:D49714.1 gb:AK101985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3815010/11Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009269biological_processresponse to desiccation
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0017084molecular_functiondelta1-pyrroline-5-carboxylate synthetase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12281.1.S1_at--375--3431Chr05:22292158..22292182 (25 bp)
CAGAGACTTTTCTACGCAGAGTTGA
LOC_Os05g38150
Os.12281.1.S1_at--1066--6051Chr05:22292004..22292164 (25 bp)
GAGTTGATAGTGCTGCTGTATTTCA
LOC_Os05g38150
Os.12281.1.S1_at--811--6891Chr05:22291838..22291862 (25 bp)
GTATCCATGCCCGTGGACCAGTGGG
LOC_Os05g38150
Os.12281.1.S1_at--888--5311Chr05:22291810..22291833 (24 bp)
GAAGGTCTCTTAACTACACGATGGA
LOC_Os05g38150
Os.12281.1.S1_at--744--7191Chr05:22291578..22291602 (25 bp)
GTCGTGTACACCCATAAGAGTCTTC
LOC_Os05g38150
Os.12281.1.S1_at--1040--6091Chr05:22291565..22291585 (21 bp)
GAGTCTTCCTTTGCAATGAGGTCAA
LOC_Os05g38150
Os.12281.1.S1_at--50--2291Chr05:22291312..22291336 (25 bp)
AAATGCTCCTTTTAGCCTGTTCAGG
LOC_Os05g38150
Os.12281.1.S1_at--506--431Chr05:22291227..22291251 (25 bp)
ATCTTATTGCGGCATTCCGATGGAT
LOC_Os05g38150
Os.12281.1.S1_at--1079--7671NONE
GGGTTCCCACTTTCAAATGTGACAC
NONE
Os.12281.1.S1_at--789--5971Chr05:22291090..22291114 (25 bp)
GAGAACTTGTGTACCAACGCGCTAT
LOC_Os05g38150
Os.12281.1.S1_at--306--2611Chr05:22291075..22291099 (25 bp)
AACGCGCTATGTTGCTTGTAATGAG
LOC_Os05g38150
Target Sequence 
CAGAGACTTTTCTACGCAGAGTTGATAGTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTT
GGATTGGGTGCTGAGGTTGGCATAAGCACAGGGCGTATCCATGCCCGTGGACCAGTGGGTGTTGAAGGTCTCTTAACTAC
ACGATGGATCTTGCGAGGGCGTGGGCAAGTGGTGAATGGTGACAAGGATGTCGTGTACACCCATAAGAGTCTTCCTTTGC
AATGAGGTCAAATGCTCCTTTTAGCCTGTTCAGGAGTAGGTGAATATCCTTTTAAGAATGGATTGACTACTTTATTTTGT
CATCTTGTACAAGCATCTTATTGCGGCATTCCGATGGATTATTGATTTTGGGGGTTCCCACTTTCAAATGTGACACCAAA
AATAAATTCATCAGTTCTGAGAGCAAGATTTTGGAGGTTCAGCTTCTCCATGTAATAAGTAAATTCAGTTCTGAGAACTT
GTGTACCAACGCGCTATGTTGCTTGTAATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis