Browse Element(s) Details


Os.49628.1.S1_at

Description gb:AK063498.1
DB_XREF= gi:32973516
TID=Os.49628.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D07, full insert sequence.
FL= gb:AK063498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3814011/11bHLH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38110Os.28943.1.S1_x_at4/115+22261925..22264978retrotransposon protein, putative, unclassified
LOC_Os05g38120Os.27308.1.S1_at11/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38120Os.7393.1.S1_at1/115+22270964..22275378homeodomain protein JUBEL2, putative, expressed
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49628.1.S1_at--456--3831Chr05:22290131..22290155 (25 bp)
CTGCTGCTGTCACCGAAAATGCCGT
LOC_Os05g38140
Os.49628.1.S1_at--191--2251Chr05:22290158..22290182 (25 bp)
AAATTGACCAAAGAGCACCTGATGA
LOC_Os05g38140
Os.49628.1.S1_at--743--4271Chr05:22290175..22290199 (25 bp)
CCTGATGAAAGCCTCGGGTGCAGTT
LOC_Os05g38140
Os.49628.1.S1_at--1143--2651Chr05:22290183..22290207 (25 bp)
AAGCCTCGGGTGCAGTTATGTGATT
LOC_Os05g38140
Os.49628.1.S1_at--972--6451Chr05:22290223..22290247 (25 bp)
GATCAAGGATCAAGGGATCACCAGA
LOC_Os05g38140
Os.49628.1.S1_at--725--2251Chr05:22290250..22290274 (25 bp)
AAATTTCCTGGTGATCATTGCTCGC
LOC_Os05g38140
Os.49628.1.S1_at--850--3891Chr05:22290257..22290281 (25 bp)
CTGGTGATCATTGCTCGCCGGAGCA
LOC_Os05g38140
Os.49628.1.S1_at--1139--3791Chr05:22290270..22290294 (25 bp)
CTCGCCGGAGCAGTCTATGTAACAA
LOC_Os05g38140
Os.49628.1.S1_at--688--8071Chr05:22290276..22290300 (25 bp)
GGAGCAGTCTATGTAACAACCCAAT
LOC_Os05g38140
Os.49628.1.S1_at--846--7011Chr05:22290288..22290312 (25 bp)
GTAACAACCCAATTGCTAAAGTAAT
LOC_Os05g38140
Os.49628.1.S1_at--917--931Chr05:22290315..22290339 (25 bp)
AGGCAATTATTATTACATCAAGATG
LOC_Os05g38140
Target Sequence 
CTGCTGCTGTCACCGAAAATGCCGTNNAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTG
TTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTA
ACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis