Browse Element(s) Details


Os.11961.1.S1_at

Description gb:AK121844.1
DB_XREF= gi:37991467
TID=Os.11961.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101G01, full insert sequence.
FL= gb:AK121844.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3804011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37970Os.5299.2.S1_a_at11/115+22193096..22195540universal stress protein family protein, expressed
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11961.1.S1_at--851--8671Chr05:22222046..22222070 (25 bp)
TGTGCATTACGGTGCTCGGGAGTTT
LOC_Os05g38040
Os.11961.1.S1_at--1053--6051Chr05:22222027..22222051 (25 bp)
GAGTTTTATGGCAACACTCCACCAA
LOC_Os05g38040
Os.11961.1.S1_at--1009--5931Chr05:22221877..22221901 (25 bp)
GAGCAGAATCCAGATGGCTCCCTGG
LOC_Os05g38040
Os.11961.1.S1_at--129--8331Chr05:22221862..22221886 (25 bp)
GGCTCCCTGGCTACCAGAGGTGATT
LOC_Os05g38040
Os.11961.1.S1_at--1096--8491Chr05:22221752..22221859 (25 bp)
TGGCAAGGTTCACTCTATTACTAAG
LOC_Os05g38040
Os.11961.1.S1_at--545--9771Chr05:22221731..22221755 (25 bp)
TAAGTACTTTGCAGAGGGCTCTCCT
LOC_Os05g38040
Os.11961.1.S1_at--52--6131Chr05:22221718..22221742 (25 bp)
GAGGGCTCTCCTTTTGTCAAACAAG
LOC_Os05g38040
Os.11961.1.S1_at--1066--7751Chr05:22220582..22220606 (25 bp)
GGTCCAAGCCGGTTTGCAAGTCATA
LOC_Os05g38040
Os.11961.1.S1_at--94--2531Chr05:22220553..22220577 (25 bp)
AACTATACATCTGTTCTACCGGTGG
LOC_Os05g38040
Os.11961.1.S1_at--262--6351Chr05:22220516..22220540 (25 bp)
GATGCGTCATTTCACCTGAGCAGAT
LOC_Os05g38040
Os.11961.1.S1_at--1104--9791Chr05:22220276..22220300 (25 bp)
TACTAAGGGTCTGTTTAATTCGCGA
LOC_Os05g38040
Target Sequence 
TGTGCATTACGGTGCTCGGGAGTTTTATGGCAACACTCCACCAAAGCAGGGTGATGCATCACCAGGAAATCAAAAGGAGC
AGGAGCAGAATCCAGATGGCTCCCTGGCTACCAGAGGTGATTGGTGGCAAGGTTCACTCTATTACTAAGTACTTTGCAGA
GGGCTCTCCTTTTGTCAAACAAGAAATAAAAGGAGTGGTCCAAGCCGGTTTGCAAGTCATAGTGGAACTATACATCTGTT
CTACCGGTGGAGGCAGTATTTGGATGCGTCATTTCACCTGAGCAGATGTGGTTGTGTGTGTTACTGTGCATGTGTGTGTT
GTTTTCCTTTTTTTTTCCTCTTGCCCTTTGTTTTGCTGTTTTTACCTGATGAAGTATAATGAAATGGTAGGGCAGCAACA
GGTAGCCCTTTGTTTTGCTGTTTTCACCTGATGAAATGTGATGAGATGGTAGGGCAGCAACAGGTAGCCTTCAATAAAAG
AAAAGGTTGCTACTTGCAACATTACTAAGGGTCTGTTTAATTCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis