Browse Element(s) Details


Os.5299.2.S1_a_at

Description gb:AK073600.1
DB_XREF= gi:32983623
TID=Os.5299.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 12YPG019
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048I03, full insert sequence.
FL= gb:AK073600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3797011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37950Os.18125.1.S1_at10/115+22179862..22183821expressed protein
LOC_Os05g37960OsAffx.27215.1.S1_at11/115+22188572..22190439hypothetical protein
LOC_Os05g37970Os.5299.2.S1_a_at11/115+22193096..22195540universal stress protein family protein, expressed
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5299.2.S1_a_at--823--2511Chr05:22195286..22195310 (25 bp)
AACTACGTGCTGTCAAACGCATCAT
LOC_Os05g37970
Os.5299.2.S1_a_at--541--8731Chr05:22195296..22195320 (25 bp)
TGTCAAACGCATCATGCCCTGTAAC
LOC_Os05g37970
Os.5299.2.S1_a_at--31--9631Chr05:22195307..22195331 (25 bp)
TCATGCCCTGTAACAGTCGTCAAGG
LOC_Os05g37970
Os.5299.2.S1_a_at--947--9371Chr05:22195340..22195364 (25 bp)
TCGATGATTCGACTTGAGTGGATAT
LOC_Os05g37970
Os.5299.2.S1_a_at--55--7951Chr05:22195359..22195383 (25 bp)
GGATATACTGTTACTGTTGCTACTG
LOC_Os05g37970
Os.5299.2.S1_a_at--321--1971Chr05:22195380..22195404 (25 bp)
ACTGTATCTGAATAAAGCGTGTATG
LOC_Os05g37970
Os.5299.2.S1_a_at--100--4671Chr05:22195396..22195420 (25 bp)
GCGTGTATGGAACTTCTTTTGTGTT
LOC_Os05g37970
Os.5299.2.S1_a_at--776--7431Chr05:22195416..22195440 (25 bp)
GTGTTTGTAATGTTGCAGCCTTCCC
LOC_Os05g37970
Os.5299.2.S1_a_at--382--1671Chr05:22195432..22195456 (25 bp)
AGCCTTCCCAGGTTCTTCTAGACAG
LOC_Os05g37970
Os.5299.2.S1_a_at--873--9551Chr05:22195445..22195469 (25 bp)
TCTTCTAGACAGTTCACTTTGCAAA
LOC_Os05g37970
Os.5299.2.S1_a_at--160--2051Chr05:22195460..22195484 (25 bp)
ACTTTGCAAACAGTCCATGCTTGTG
LOC_Os05g37970
Target Sequence 
AACTACGTGCTGTCAAACGCATCATGCCCTGTAACAGTCGTCAAGGGGAAGTGATCGATGATTCGACTTGAGTGGATATA
CTGTTACTGTTGCTACTGTATCTGAATAAAGCGTGTATGGAACTTCTTTTGTGTTTGTAATGTTGCAGCCTTCCCAGGTT
CTTCTAGACAGTTCACTTTGCAAACAGTCCATGCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5299.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis