Browse Element(s) Details


OsAffx.24742.1.S1_x_at

Description tigr:9630.m04437
TID=OsAffx.24742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4575011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45720Os.47463.1.S1_x_at6/112+27810607..27814307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45720Os.14491.2.S1_x_at4/112+27810607..27814307transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45730NANA2+27817142..27820446transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45740NANA2+27825552..27826577hypothetical protein
LOC_Os02g45750OsAffx.24742.1.S1_x_at11/112+27831765..27835133Protein kinase domain containing protein, expressed
LOC_Os02g45750Os.55361.1.S1_x_at2/112+27831765..27835133Protein kinase domain containing protein, expressed
LOC_Os02g45760Os.49702.1.S1_at11/112+27848001..27850160GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24742.1.S1_x_at--1142--1931Chr02:27834559..27834583 (25 bp)
ACGGCTTGCAGTACATCCACGAGCA
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--324--4531Chr02:27834590..27834614 (25 bp)
GCCGCGCGTGGTGCACAAGGACATC
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--573--9371Chr02:27834634..27834658 (25 bp)
TCGACGACCGCATGCGCGCCAAGAT
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--920--7091Chr02:27834759..27834783 (25 bp)
GTCACCACCAAGATGGACGTGTTCG
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--680--3211Chr02:27834767..27834791 (25 bp)
CAAGATGGACGTGTTCGCCTACGGC
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--986--8451Chr02:27834985..27835009 (25 bp)
TGGCGAAGGCTTGCCTGCACCGTGA
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--33--4111Chr02:27835015..27835039 (25 bp)
CGAAGCGCCCCAGCATGGTGGACGT
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--755--4351Chr02:27835024..27835048 (25 bp)
CCAGCATGGTGGACGTGGCGTACAC
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--604--8471Chr02:27835039..27835063 (25 bp)
TGGCGTACACGCTGTCGAAGGCAGA
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--311--1371Chr02:27835066..27835090 (25 bp)
AGAGCTTCGGCGACTACTCGGGCGA
LOC_Os02g45750
OsAffx.24742.1.S1_x_at--573--3711Chr02:27835079..27835103 (25 bp)
CTACTCGGGCGAGAGCGTGTCCGTC
LOC_Os02g45750
Target Sequence 
ACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGAC
GACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCAC
GCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCC
TGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTG
TTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCC
GGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACG
TGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24742.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis