Browse Element(s) Details


Os.11505.1.S1_at

Description gb:AK060823.1
DB_XREF= gi:32970841
TID=Os.11505.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B03, full insert sequence.
FL= gb:AK060823.1 gb:AK098981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5684011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11505.1.S1_at--585--771Chr02:34829561..34829585 (25 bp)
ATGGGCTGGATGCTCCATTCCAGGA
LOC_Os02g56840
Os.11505.1.S1_at--618--8431Chr02:34829678..34829702 (25 bp)
GGCCTATGAGTATTGGTCCATTGCT
LOC_Os02g56840
Os.11505.1.S1_at--418--8431Chr02:34829712..34829736 (25 bp)
GGCCAGGAGAAGAGACCGTCGTCTA
LOC_Os02g56840
Os.11505.1.S1_at--123--5831Chr02:34829725..34829749 (25 bp)
GACCGTCGTCTAGTTCTTGATGAAG
LOC_Os02g56840
Os.11505.1.S1_at--745--6311Chr02:34829743..34829767 (25 bp)
GATGAAGGTGTAACGGTCCCTCAGA
LOC_Os02g56840
Os.11505.1.S1_at--32--7471Chr02:34829836..34829860 (25 bp)
GTGTGCTTCAGCCTGATGGAGACCA
LOC_Os02g56840
Os.11505.1.S1_at--296--3091Chr02:34829960..34829984 (25 bp)
AATAAGACTCATAATGCGCCATTTT
LOC_Os02g56840
Os.11505.1.S1_at--220--10871Chr02:34829999..34830023 (25 bp)
TTGGCTTTTGTTGCCAATGCTGTGC
LOC_Os02g56840
Os.11505.1.S1_at--1084--3271Chr02:34830057..34830081 (25 bp)
CAAACTGAACTTTCTGCCGAGAAGA
LOC_Os02g56840
Os.11505.1.S1_at--971--2251Chr02:34830082..34830106 (25 bp)
AAATACCATAGTGCGATGCTTGATA
LOC_Os02g56840
Os.11505.1.S1_at--292--6311Chr02:34830103..34830127 (25 bp)
GATAATAGCCTACATTTGGTTTGCA
LOC_Os02g56840
Target Sequence 
ATGGGCTGGATGCTCCATTCCAGGAGGCATCAGTCAGCCTGGGAGGTAGGGGATCAACAAAAATTGTTTGTGTCCAAAGC
TATGACAGCGAAGATGAGGAGGTGCCTGAGAATTACTGGCCTATGAGTATTGGTCCATTGCTGCGACNAAGGGCCAGGAG
AAGAGACCGTCGTCTAGTTCTTGATGAAGGTGTAACGGTCCCTCAGAAAAGGACTGACGAGTGGATGGAGCTGGAGATGG
GTGAGTTCATCAACGAGGAAGGTGAAGATGGAGAGGTGTGCTTCAGCCTGATGGAGACCAAGGGAGGCAATTGGAAGAGA
GGTCTTATTGTGCAGGGCATTGAGATCAGACTTAAGAAATCTGGCTGATGAACTTCTAAGATCAAGGCGCGTGTAATTAA
ATAAGACTCATAATGCGCCATTTTTTTTGTTTGTGGTTTTGGCTTTTGTTGCCAATGCTGTGCAAAACTACAGGTGTGTT
TCTTTTTTCTTGCGGGCAAACTGAACTTTCTGCCGAGAAGAAAATACCATAGTGCGATGCTTGATAATAGCCTACATTTG
GTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis