Browse Element(s) Details


Os.49877.1.S1_at

Description gb:AK119259.1
DB_XREF= gi:37988882
TID=Os.49877.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H05, full insert sequence.
FL= gb:AK119259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4613010/11Plastocyanin-like domain containing protein, expressed
LOC_Os02g568201/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49877.1.S1_at--540--9451NONE
TCGGCGATACGCTATTGTTCCAGTA
NONE
Os.49877.1.S1_at--598--10231Chr04:27115193..27115214 (22 bp)
TATTGTTCCAGTACACCAGCGCGGG
LOC_Os04g46130
Os.49877.1.S1_at--600--9831Chr04:27115101..27115125 (25 bp)
TACAAGGACGGGACGACCATCGTCA
LOC_Os04g46130
Os.49877.1.S1_at--355--511Chr04:27115083..27115107 (25 bp)
ATCGTCACGCTAACCAGGTCGGGCA
LOC_Os04g46130
Os.49877.1.S1_at--913--8431Chr04:27114823..27114847 (25 bp)
GGCCTTGCTGTGATAGGCTGATCGT
LOC_Os04g46130
Os.49877.1.S1_at--794--8331Chr04:27114808..27114832 (25 bp)
GGCTGATCGTATGGCCGCTTGGAAA
LOC_Os04g46130
Os.49877.1.S1_at--920--2331Chr04:27114786..27114810 (25 bp)
AAAGAGGCAGTGCTGTTCCTTGTGT
LOC_Os04g46130
Os.49877.1.S1_at--1054--9231Chr04:27114770..27114794 (25 bp)
TCCTTGTGTGTGTCTGAGCTGCATA
LOC_Os04g46130
Os.49877.1.S1_at--232--9931Chr04:27114716..27114740 (25 bp)
TACGTAGTGTAGTGTGTTTCTCAAA
LOC_Os04g46130
Os.49877.1.S1_at--354--3071Chr04:27114690..27114714 (25 bp)
AATCTTTGTGGAGTGTTCGCTTAAT
LOC_Os04g46130
Os.49877.1.S1_at--188--7852Chr02:34817861..34817893 (24 bp)
GGTACCGAATTCTTGTATCTTGTTG
LOC_Os02g56820
Target Sequence 
TCGGCGATACGCTATTGTTCCAGTACACCAGCGCGGGGCACTCGGTGGTGGAGGTGAGCGAGGCGGACCACACCTCGTGC
TCGGCGGCGAACCCGCTGCGGTCGTACAAGGACGGGACGACCATCGTCACGCTAACCAGGTCGGGCACCCGCTACTTCAT
CTGCGGCAGCACGGGCCACTGCGGCGCCGGCATGAAGCTCACCGTGACGGTCGCCACCCTCTCCGGCAGCGCCGCCGGCG
GCACGAGGCTGGCGAAGCCGTCGTCGTCCGACGCGGACCCGACGACGACGACGACGACCAGGACCTCGTCGGCCACGGGC
GGCGCCACTGGCAGCTGGGCCCCGCGCACTGCCACGTGGCTGCTGTTCTTCGCCGCCGTGGGGGCCTTGCTGTGATAGGC
TGATCGTATGGCCGCTTGGAAAGAGGCAGTGCTGTTCCTTGTGTGTGTCTGAGCTGCATATCATTTTTAGTTTTGTATTA
TGAGACAACTACGTAGTGTAGTGTGTTTCTCAAATAATCTTTGTGGAGTGTTCGCTTAATTATATGGTACCGAATTCTTG
TATCTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis