Browse Element(s) Details


OsAffx.14290.1.S1_at

Description tigr:9632.m04440
TID=OsAffx.14290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4611010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0008289molecular_functionlipid binding
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14290.1.S1_at--1002--7631Chr04:27108017..27108041 (25 bp)
GGGAGCTGCCACTGCCAAAGTAGGC
LOC_Os04g46110
OsAffx.14290.1.S1_at--5--3831Chr04:27108012..27108036 (25 bp)
CTGCCACTGCCAAAGTAGGCGCGGA
LOC_Os04g46110
OsAffx.14290.1.S1_at--467--1991Chr04:27108007..27108031 (25 bp)
ACTGCCAAAGTAGGCGCGGAGACCG
LOC_Os04g46110
OsAffx.14290.1.S1_at--182--8111Chr04:27107735..27107759 (25 bp)
GGACGACACCTGTGGCGCCGAGGCT
LOC_Os04g46110
OsAffx.14290.1.S1_at--402--4511Chr04:27107719..27107743 (25 bp)
GCCGAGGCTGCCGTGGTCGGTGCAG
LOC_Os04g46110
OsAffx.14290.1.S1_at--1094--1611Chr04:27107696..27107720 (25 bp)
AGCGGCCGAGACCTGTGGCGACGAG
LOC_Os04g46110
OsAffx.14290.1.S1_at--1153--5871Chr04:27107642..27107666 (25 bp)
GAGCGGAGGACCGTTCGACGCCGAC
LOC_Os04g46110
OsAffx.14290.1.S1_at--1042--2711Chr04:27107575..27107599 (25 bp)
AAGCAGAGCGCGAGAGGCCGTAGGA
LOC_Os04g46110
OsAffx.14290.1.S1_at--51--6931Chr04:27107556..27107580 (25 bp)
GTAGGAGCGCCATTGCCGCGTCTCT
LOC_Os04g46110
OsAffx.14290.1.S1_at--571--4651Chr04:27107539..27107563 (25 bp)
GCGTCTCTTTCTAACCAGCGACTTA
LOC_Os04g46110
OsAffx.14290.1.S1_at--518--9551Chr04:27107534..27107558 (25 bp)
TCTTTCTAACCAGCGACTTAGCTAG
NONE
Target Sequence 
GGGAGCTGCCACTGCCAAAGTAGGCGCGGAGACCGGTGGCGAGGAGGTGGCGGTCGGCGGTGACGCGGCGGCCAGCTGTG
GCGCCGCGGCGGCCGTGGTCGGTGGGGCCGCGGCGGAAACCTGTGGCGCCGAGGCGGCATTGGGCGGAGCCGCCGCGGAA
ACCCGTGGCGCCGAGGCGGCATTGGTCGGTGCTGCGGCGGAGACCTTCGGCGCCTGGGCGGCATTGGTCGGGGCCGCGGC
GGAGACCTGCGGCGCCGAGGCGGCATTGGTCGGGGCCGCCGCGGACGACACCTGTGGCGCCGAGGCTGCCGTGGTCGGTG
CAGCGGCCGAGACCTGTGGCGACGAGGCGGCGGATGCCTGCGGCGTGGCGGCGCTGAGCGGAGGACCGTTCGACGCCGAC
GGCGACGAGGCCGGCGACTGCGCGGCGCAGGAGACGAGCAGCAAGCAGAGCGCGAGAGGCCGTAGGAGCGCCATTGCCGC
GTCTCTTTCTAACCAGCGACTTAGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis