Browse Element(s) Details


Os.20424.1.S1_s_at

Description gb:BI805908
DB_XREF= gi:15853112
DB_XREF=S051B02
CLONE=S051B02
TID=Os.20424.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20424 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4610011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20424.1.S1_s_at--311--331Chr04:27099736..27099760 (25 bp)
ATAAATCCTGGAACTAACCCTCGCA
LOC_Os04g46100
Os.20424.1.S1_s_at--742--2011Chr04:27099724..27099748 (25 bp)
ACTAACCCTCGCATAATTTCTCTGT
LOC_Os04g46100
Os.20424.1.S1_s_at--48--10491Chr04:27099694..27099718 (25 bp)
TTAACCTTTTGTCCTGGTCAGAAAT
LOC_Os04g46100
Os.20424.1.S1_s_at--934--9651Chr04:27099567..27099591 (25 bp)
TCAGCTTTCCATGTGCATTGCTATA
LOC_Os04g46100
Os.20424.1.S1_s_at--1053--7811Chr04:27099482..27099506 (25 bp)
GGTCATAATCTTTGGGAGCCCACAC
LOC_Os04g46100
Os.20424.1.S1_s_at--647--2051Chr04:27099459..27099483 (25 bp)
ACTTCACGTGCCGTAGATTTTCACC
LOC_Os04g46100
Os.20424.1.S1_s_at--786--6531Chr04:27099444..27099468 (25 bp)
GATTTTCACCACCTGGGAGCCAAGA
LOC_Os04g46100
Os.20424.1.S1_s_at--795--4391Chr04:27099426..27099450 (25 bp)
GCCAAGATTGATGACTGGGCCATAT
LOC_Os04g46100
Os.20424.1.S1_s_at--9--7471Chr04:27099369..27099393 (25 bp)
GTGTGATTGCTGGTTACTGGCTAGC
LOC_Os04g46100
Os.20424.1.S1_s_at--906--91Chr04:27099309..27099333 (25 bp)
ATTCGTTTATGGCAAGTGGCCCTCA
LOC_Os04g46100
Os.20424.1.S1_s_at--1061--531Chr04:27099277..27099301 (25 bp)
ATCCCATATCCCCATTAGGTGAAAT
LOC_Os04g46100
Target Sequence 
ATAAATCCTGGAACTAACCCTCGCATAATTTCTCTGTTTCTATTAACCTTTTGTCCTGGTCAGAAATAGGATCATTGATA
TCTATGTGCATCATATATCACCTGTAAATTTCATCGCCTCTGTGGAATGNTGCATGNTTTATGTTGTCAGTAAGNAATCA
AACTCATGGNCATCAGCTTTCCATGTGCATTGCTATATNTTATGCCATGGGCTGACTCANTTTAAAATGGCTTGTTNATG
CCACTTGGTATATAATTTGGTCATAATCTTTGGGAGCCCACACTTCACGTGCCGTAGATTTTCACCACCTGGGAGCCAAG
ATTGATGACTGGGCCATATGTATATTGTTAGCTGTAGTACATTGTGTATTAGTGTGATTGCTGGTTACTGGCTAGCAGTG
ATGGAGTCATGGAGAGGATAATATCATTTGCATTCGTTTATGGCAAGTGGCCCTCAATAGGCCATCCCATATCCCCATTA
GGTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20424.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis