Browse Element(s) Details


OsAffx.26481.1.S1_at

Description tigr:9632.m04441
TID=OsAffx.26481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stellacyanin. (japanese lacquer tree, varnish tree, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4612011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26481.1.S1_at--638--8371Chr04:27110242..27110266 (25 bp)
GGCGTCGTACAACGTCGGCAACAGC
LOC_Os04g46120
OsAffx.26481.1.S1_at--608--8471Chr04:27110184..27110208 (25 bp)
TGGCTCGACGGCAAGTCGTTCTTCG
LOC_Os04g46120
OsAffx.26481.1.S1_at--780--2851Chr04:27110172..27110196 (25 bp)
AAGTCGTTCTTCGTCGGCGACACTC
LOC_Os04g46120
OsAffx.26481.1.S1_at--341--2011Chr04:27110050..27110175 (25 bp)
ACTCTCGTGTTCCAGTACTCGAAGT
LOC_Os04g46120
OsAffx.26481.1.S1_at--170--7011Chr04:27110036..27110060 (25 bp)
GTACTCGAAGTACCACACGTTGAGC
LOC_Os04g46120
OsAffx.26481.1.S1_at--1101--1691Chr04:27110025..27110049 (25 bp)
ACCACACGTTGAGCGAGGTCGACGA
LOC_Os04g46120
OsAffx.26481.1.S1_at--1075--7831Chr04:27109995..27110019 (25 bp)
GGTACAGGAACTGCAGCACGGCCAG
LOC_Os04g46120
OsAffx.26481.1.S1_at--63--5751Chr04:27109951..27109975 (25 bp)
GACGGCAACACGACGGTGGCCCTCA
LOC_Os04g46120
OsAffx.26481.1.S1_at--1148--10611Chr04:27109906..27109930 (25 bp)
TTCGTCTGCGGCAACGAGCTGCACT
LOC_Os04g46120
OsAffx.26481.1.S1_at--26--1611Chr04:27109890..27109914 (25 bp)
AGCTGCACTGCCTCGGCGGCATGAG
LOC_Os04g46120
OsAffx.26481.1.S1_at--634--4691Chr04:27109875..27109899 (25 bp)
GCGGCATGAGGCTTCACGTGCCCGT
LOC_Os04g46120
Target Sequence 
GGCGTCGTACAACGTCGGCAACAGCGCCGGCTGGGACATCAGCGCCGACTTCCCGTCCTGGCTCGACGGCAAGTCGTTCT
TCGTCGGCGACACTCTCGTGTTCCAGTACTCGAAGTACCACACGTTGAGCGAGGTCGACGAGGCGGGGTACAGGAACTGC
AGCACGGCCAGCGCGGTGCTCTCCAGCAGCGACGGCAACACGACGGTGGCCCTCACGGCGCCCGGCGACCGCTACTTCGT
CTGCGGCAACGAGCTGCACTGCCTCGGCGGCATGAGGCTTCACGTGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis