Browse Element(s) Details


OsAffx.13041.3.S1_at

Description tigr:9632.m04444
TID=OsAffx.13041.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4615010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g46200Os.10663.1.S1_at8/114+27143000..27143860Oleosin 16 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13041.3.S1_at--792--7591NONE
GGGCAGCAAGCAAGATCAGACTGTT
NONE
OsAffx.13041.3.S1_at--853--1271Chr04:27121786..27121810 (25 bp)
AGATCAGACTGTTGTAGGCCATCCA
LOC_Os04g46150
OsAffx.13041.3.S1_at--386--391Chr04:27121788..27121812 (25 bp)
ATCAGACTGTTGTAGGCCATCCAGT
LOC_Os04g46150
OsAffx.13041.3.S1_at--651--8791Chr04:27121795..27121819 (25 bp)
TGTTGTAGGCCATCCAGTCCAGCGT
LOC_Os04g46150
OsAffx.13041.3.S1_at--1075--8751Chr04:27121798..27121822 (25 bp)
TGTAGGCCATCCAGTCCAGCGTCAT
LOC_Os04g46150
OsAffx.13041.3.S1_at--696--571Chr04:27121806..27121830 (25 bp)
ATCCAGTCCAGCGTCATTCTGGACA
LOC_Os04g46150
OsAffx.13041.3.S1_at--633--3371Chr04:27121814..27121838 (25 bp)
CAGCGTCATTCTGGACAAGGCGATC
LOC_Os04g46150
OsAffx.13041.3.S1_at--501--4651Chr04:27121816..27121840 (25 bp)
GCGTCATTCTGGACAAGGCGATCAT
LOC_Os04g46150
OsAffx.13041.3.S1_at--731--3591Chr04:27121820..27121844 (25 bp)
CATTCTGGACAAGGCGATCATGACA
LOC_Os04g46150
OsAffx.13041.3.S1_at--1055--9451Chr04:27121823..27121847 (25 bp)
TCTGGACAAGGCGATCATGACAAGG
LOC_Os04g46150
OsAffx.13041.3.S1_at--241--2211Chr04:27121828..27121852 (25 bp)
ACAAGGCGATCATGACAAGGTCCAG
LOC_Os04g46150
Target Sequence 
GGGCAGCAAGCAAGATCAGACTGTTGTAGGCCATCCAGTCCAGCGTCATTCTGGACAAGGCGATCATGACAAGGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13041.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis