Browse Element(s) Details


Os.11130.1.S1_at

Description gb:AK059677.1
DB_XREF= gi:32969695
TID=Os.11130.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-G12, full insert sequence.
FL= gb:AK059677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4619010/11Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g46200Os.10663.1.S1_at8/114+27143000..27143860Oleosin 16 kDa, putative, expressed
LOC_Os04g46210OsAffx.10071.1.S1_at7/114+27148735..27150603transposon protein, putative, Mariner sub-class
LOC_Os04g46220Os.11094.1.A1_at11/114+27152100..27153757AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11130.1.S1_at--639--7131Chr04:27139383..27139404 (22 bp)
GTCATCTTGCTTTATCCTCAGGATC
LOC_Os04g46190
Os.11130.1.S1_at--736--2731Chr04:27139499..27139523 (25 bp)
AAGAAGGAATCCGTTGCTTCACCCT
LOC_Os04g46190
Os.11130.1.S1_at--188--2491NONE
AACAGCTGATATGGATCCTGCCCGG
NONE
Os.11130.1.S1_at--108--4271Chr04:27140857..27140878 (22 bp)
CCGGCGTGCTTCGTTTCTTGAGGAG
LOC_Os04g46190
Os.11130.1.S1_at--100--2951Chr04:27140894..27140918 (25 bp)
AAGGCTCATTCTGTTGCTGTTTCTG
LOC_Os04g46190
Os.11130.1.S1_at--461--5491Chr04:27141413..27141437 (25 bp)
GAACATTATGTCTGTTTCTCCTGTG
LOC_Os04g46190
Os.11130.1.S1_at--721--10671Chr04:27141602..27141626 (25 bp)
TTCCTCTCCTGATAGCTTGTTGCAG
LOC_Os04g46190
Os.11130.1.S1_at--128--2351Chr04:27141904..27141928 (25 bp)
AAAGCTAGGATTGCGCAGTACCCCG
LOC_Os04g46190
Os.11130.1.S1_at--1027--4191Chr04:27141925..27141949 (25 bp)
CCCGGGTCACTCAATTTCAATGTCA
LOC_Os04g46190
Os.11130.1.S1_at--374--751Chr04:27141944..27141968 (25 bp)
ATGTCATGGCTCTTTCAAAGCAGTG
LOC_Os04g46190
Os.11130.1.S1_at--689--1711Chr04:27142007..27142031 (25 bp)
ACCACTCTTTTCCAGTCTGCAATAA
LOC_Os04g46190
Target Sequence 
GTCATCTTGCTTTATCCTCAGGATCGGAAGAAGGAATCCGTTGCTTCACCCTCCTCCACGGTCGAGAGCAAGTTGAGGGG
TCATATTTTGACAGATTTTACAAACAAACAGCTGATATGGATCCTGCCCGGCGTGCTTCGTTTCTTGAGGAGGATGAAGA
AATGGAAAAGGCTCATTCTGTTGCTGTTTCTGCTGGCGATACAGAGGCCAAGGATGGAGTAATCGAACATTATGTCTGTT
TCTCCTGTGTTGATGATGAAATTTTTGAACTTGATGGAGGGAATTCGCAGCCAATCTCCCATGGCCCTTCCTCTCCTGAT
AGCTTGTTGCAGGACGCTGCAAAAGTCATCAAAGCTAGGATTGCGCAGTACCCCGGGTCACTCAATTTCAATGTCATGGC
TCTTTCAAAGCAGTGATGAAATCATATCCTGGTAGAAAGGTTTTATTATTCACACCACTCTTTTCCAGTCTGCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis