Browse Element(s) Details


Os.10663.1.S1_at

Description gb:AF022148.1
DB_XREF= gi:3492927
GEN=1cp
TID=Os.10663.1
CNT=62
FEA=FLmRNA
TIER=FL+Stack
STK=49
UG=Os.10663 (NCBI UniGene Cluster)
DEF=Oryza sativa 16 kDa oleosin isoform R16 (1cp) mRNA, complete cds.
PROD=16 kDa oleosin isoform R16
FL= gb:L76464.1 gb:AK103379.1 gb:U25970.1 gb:AK105470.1 gb:AF022148.1 gb:U43930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g462008/11Oleosin 16 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g46200Os.10663.1.S1_at8/114+27143000..27143860Oleosin 16 kDa, putative, expressed
LOC_Os04g46210OsAffx.10071.1.S1_at7/114+27148735..27150603transposon protein, putative, Mariner sub-class
LOC_Os04g46220Os.11094.1.A1_at11/114+27152100..27153757AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0012511cellular_componentlipid storage body (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10663.1.S1_at--142--7791Chr04:27143532..27143556 (25 bp)
GGTGCTGGTCATCTTCAGCCCCGTG
LOC_Os04g46200
Os.10663.1.S1_at--193--3811NONE
CTCCGTGTTCTCGTGGAATGTACAA
NONE
Os.10663.1.S1_at--50--10431NONE
TTCTCGTGGAATGTACAAGTACCTC
NONE
Os.10663.1.S1_at--365--5611Chr04:27143411..27143435 (25 bp)
TACAAGTACCTCACCGGGAAGCACC
LOC_Os04g46200
Os.10663.1.S1_at--1151--8531Chr04:27143368..27143392 (25 bp)
TGGACCACGCCAAGGCGAGGCTCGC
LOC_Os04g46200
Os.10663.1.S1_at--62--8491Chr04:27143173..27143197 (25 bp)
TGGCTACTCCTCTTATCTGCTGAGC
LOC_Os04g46200
Os.10663.1.S1_at--1008--10151Chr04:27143160..27143184 (25 bp)
TATCTGCTGAGCTCTGTAAATGCAT
LOC_Os04g46200
Os.10663.1.S1_at--24--4991NONE
GCATGCGTGCATGTTTAATTAAGCT
NONE
Os.10663.1.S1_at--101--3771Chr04:27143101..27143125 (25 bp)
CTCTCCTATGTAATATGTCCCCTAG
LOC_Os04g46200
Os.10663.1.S1_at--817--7071Chr04:27143092..27143116 (25 bp)
GTAATATGTCCCCTAGATTATCTAA
LOC_Os04g46200
Os.10663.1.S1_at--455--10031Chr04:27143079..27143103 (25 bp)
TAGATTATCTAAGAGGCGATCGTGC
LOC_Os04g46200
Target Sequence 
GGTGCTGGTCATCTTCAGCCCCGTGCTGGNTNCCGGCNGGCCATCGCGCTGGCGCTCATGGCGGCCGGGTTCGTCACCTC
GGTGNGGGCTCGGCGTGNCCGCNGCTCTCCGTGTTCTCGTGGAATGTACAAGTACCTCACCGGGAAGCACCCNGCCGGGC
GCCNGACCAGTCTGGACCACGCCAAGGCGAGGCTCGCNGTCCAAGGCCCCGCGACATCAAGGAGGCGGCGCAGCAGCCNC
CGCATCGACCAGGCGCAGGCNGTCTTAGGGCGGCCNTGCCGCGGCGAGGCGCCNGCNTTCTGCTAGCTAGCTCGATCGGG
CGGCGCACGGGACGGCGCCGGCCGGCGCATGTGCGTTCGCCGTGGCCACAGCACCACNGCTGGCTACTCCTCTTATCTGC
TGAGCTCTGTAAATGCATGCGTGCATGTTTAATTAAGCTTGGTCGCGTAGTACTCTCCTATGTAATATGTCCCCTAGATT
ATCTAAGAGGCGATCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis