Browse Element(s) Details


Os.12637.1.S1_at

Description gb:AK102945.1
DB_XREF= gi:32988154
TID=Os.12637.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114L22, full insert sequence.
FL= gb:AK102945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4618010/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g46200Os.10663.1.S1_at8/114+27143000..27143860Oleosin 16 kDa, putative, expressed
LOC_Os04g46210OsAffx.10071.1.S1_at7/114+27148735..27150603transposon protein, putative, Mariner sub-class
LOC_Os04g46220Os.11094.1.A1_at11/114+27152100..27153757AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12637.1.S1_at--545--4131Chr04:27138214..27138238 (25 bp)
GGGAAATACCTTGACTTTGAGTTCT
LOC_Os04g46180
Os.12637.1.S1_at--646--10771Chr04:27138230..27138254 (25 bp)
TTGAGTTCTTCTAGGGTTGTGCTGT
LOC_Os04g46180
Os.12637.1.S1_at--556--6631Chr04:27138245..27138269 (25 bp)
GTTGTGCTGTACTTGCCTAGTGACA
LOC_Os04g46180
Os.12637.1.S1_at--126--10831Chr04:27138316..27138340 (25 bp)
TTGTGATTCGATGTGCTTGACCTGG
LOC_Os04g46180
Os.12637.1.S1_at--145--8931Chr04:27138333..27138357 (25 bp)
TGACCTGGTGGTGTTTGTCGCACCA
LOC_Os04g46180
Os.12637.1.S1_at--1089--10271Chr04:27138416..27138440 (25 bp)
TTTGCATGTTTGAATTCTTCTCCCC
LOC_Os04g46180
Os.12637.1.S1_at--372--3891NONE
CTGTGCTGTTTCTGTAGTGTAGTGC
NONE
Os.12637.1.S1_at--889--6931Chr04:27138458..27138482 (25 bp)
GTAGTGCTATCTAACAGTCTGGTTT
LOC_Os04g46180
Os.12637.1.S1_at--988--7571Chr04:27138490..27138514 (25 bp)
GGGCTAACAATTGCGTTCCAGGAAG
LOC_Os04g46180
Os.12637.1.S1_at--770--2951Chr04:27138512..27138536 (25 bp)
AAGGCCTCAACGATGGATATTTCTG
LOC_Os04g46180
Os.12637.1.S1_at--700--2691Chr04:27138552..27138576 (25 bp)
AAGCTCAGTCTGTTTAATAGTCGCA
LOC_Os04g46180
Target Sequence 
GGGAAATACCTTGACTTTGAGTTCTTCTAGGGTTGTGCTGTACTTGCCTAGTGACAAGAGAAGCTGTTGGTTGCAAAACT
GCTGGGGCTGGTCAGTTTGGTGTTGTGATTCGATGTGCTTGACCTGGTGGTGTTTGTCGCACCACNGGCAGCAAAATTAT
CGGATCTGAAATTCTGAATTGGCCAGAATTAGGTTGATATATGTTTGCATGTTTGAATTCTTCTCCCCCTGTGCTGTTTC
TGTAGTGTAGTGCTATCTAACAGTCTGGTTTGAAACATGGGCTAACAATTGCGTTCCAGGAAGGCCTCAACGATGGATAT
TTCTGGAACTAGTAGCGTATAAGCTCAGTCTGTTTAATAGTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis