Browse Element(s) Details


Os.11094.1.A1_at

Description gb:CB674007
DB_XREF= gi:29677732
DB_XREF=OSJNEe08N10.r
CLONE=OSJNEe08N10
TID=Os.11094.1
CNT=18
FEA=EST
TIER=Stack
STK=7
UG=Os.11094 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4622011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g46200Os.10663.1.S1_at8/114+27143000..27143860Oleosin 16 kDa, putative, expressed
LOC_Os04g46210OsAffx.10071.1.S1_at7/114+27148735..27150603transposon protein, putative, Mariner sub-class
LOC_Os04g46220Os.11094.1.A1_at11/114+27152100..27153757AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11094.1.A1_at--1099--811Chr04:27152664..27152688 (25 bp)
ATGGTCGACGTCATATCACCTTGAC
LOC_Os04g46220
Os.11094.1.A1_at--213--7931Chr04:27152631..27152655 (25 bp)
GGATTGACCAGCGAGCACGAGCCAG
LOC_Os04g46220
Os.11094.1.A1_at--295--1691Chr04:27152608..27152632 (25 bp)
AGCCATTGCTTTGCACGGCGCGAGA
LOC_Os04g46220
Os.11094.1.A1_at--778--6411Chr04:27152574..27152598 (25 bp)
GATCAGGCGATGGAACCCCGTGAGC
LOC_Os04g46220
Os.11094.1.A1_at--834--9791Chr04:27152486..27152510 (25 bp)
TAAGCTCGCGGGTGCAACTGGTGAA
LOC_Os04g46220
Os.11094.1.A1_at--665--9011Chr04:27152452..27152476 (25 bp)
TGCAATCGTGTGTGGGCGAGCTCTA
LOC_Os04g46220
Os.11094.1.A1_at--716--8611Chr04:27152405..27152429 (25 bp)
TGGTGGTATTGTTGTCCCGGCGCAA
LOC_Os04g46220
Os.11094.1.A1_at--1036--6151Chr04:27152358..27152382 (25 bp)
GAGGATACTCTGTGTCTACTAGCGT
LOC_Os04g46220
Os.11094.1.A1_at--869--9531Chr04:27152344..27152368 (25 bp)
TCTACTAGCGTGTTCTTGTCAGGGA
LOC_Os04g46220
Os.11094.1.A1_at--931--10771Chr04:27152329..27152353 (25 bp)
TTGTCAGGGAATGCACGGTGTCGTC
LOC_Os04g46220
Os.11094.1.A1_at--169--9191Chr04:27152293..27152317 (25 bp)
TCCTAAGGGTCATAATTCGCGTCAT
LOC_Os04g46220
Target Sequence 
ATGGTCGACGTCATATCACCTTGACGCCCCAACGGATTGACCAGCGAGCACGAGCCAGCCATTGCTTTGCACGGCGCGAG
ACGGCAAAGGGATCAGGCGATGGAACCCCGTGAGCGCGACGGCGCAAGCGAGCAGCATCCCCGCGAAAGCTCCNCCGGAT
GCAAAATTGCAAACGCGATAAGCTCGCGGGTGCAACTGGTGAAATTGGGTGGTGCAATCGTGTGTGGGCGAGCTCTAGCA
GATAGTAGCGTGGTGGTGGTGGTGGTATTGTTGTCCCGGCGCAACTCGCCCAAGTGGGGGGGTGAGGAGGATACTCTGTG
TCTACTAGCGTGTTCTTGTCAGGGAATGCACGGTGTCGTCAAGTGTGCAAATCCTAAGGGTCATAATTCGCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11094.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis