Browse Element(s) Details


Os.16977.1.S1_at

Description gb:AK122016.1
DB_XREF= gi:37991639
TID=Os.16977.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111L04, full insert sequence.
FL= gb:AK122016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g461709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein
LOC_Os04g46170Os.16977.1.S1_at9/114+27126200..27127952expressed protein
LOC_Os04g46180Os.12637.1.S1_at10/114+27134730..27138620Protein kinase G11A, putative, expressed
LOC_Os04g46190Os.11130.1.S1_at10/114+27139055..27142121Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g46200Os.10663.1.S1_at8/114+27143000..27143860Oleosin 16 kDa, putative, expressed
LOC_Os04g46210OsAffx.10071.1.S1_at7/114+27148735..27150603transposon protein, putative, Mariner sub-class
LOC_Os04g46220Os.11094.1.A1_at11/114+27152100..27153757AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16977.1.S1_at--844--6331Chr04:27127444..27127468 (25 bp)
GATGCTGACGTTGAGTGCTTTGGAA
LOC_Os04g46170
Os.16977.1.S1_at--368--9051Chr04:27127537..27127561 (25 bp)
TGCATGATGATTCTCACTTGCTGAA
LOC_Os04g46170
Os.16977.1.S1_at--991--2051Chr04:27127552..27127576 (25 bp)
ACTTGCTGAATTTCGTTGTTCTGAA
LOC_Os04g46170
Os.16977.1.S1_at--38--8971Chr04:27127573..27127597 (25 bp)
TGAAATGTTAACGACTCCTGGATGT
LOC_Os04g46170
Os.16977.1.S1_at--828--6011Chr04:27127659..27127683 (25 bp)
GAGAGTCTTATCTGGCTCATGAAGG
LOC_Os04g46170
Os.16977.1.S1_at--100--6971Chr04:27127711..27127735 (25 bp)
GTAGCTAGCTCCATCGAAATTTTGA
LOC_Os04g46170
Os.16977.1.S1_at--541--7971Chr04:27127778..27127802 (25 bp)
GGATGTTTAGTTTCTCTGGTCAGTC
LOC_Os04g46170
Os.16977.1.S1_at--571--10411Chr04:27127829..27127853 (25 bp)
TTATAGCCCTCTCTAAATAGCATGA
LOC_Os04g46170
Os.16977.1.S1_at--653--7411Chr04:27127891..27127915 (25 bp)
GTGATTGCTTTTATGTATCCAGCTA
LOC_Os04g46170
Os.16977.1.S1_at--854--1551NONE
AGCTATTCAATTTTATGCCCAGTGC
NONE
Os.16977.1.S1_at--51--611NONE
ATGCCCAGTGCCTTACTGAGTTAAA
NONE
Target Sequence 
GATGCTGACGTTGAGTGCTTTGGAATGGATATTGNTGGATAATGAAGNCNATACTGATGATGAGGACAACGAACGGGATA
TGTATGATTGACANTTGCATGATGATTCTCACTTGCTGAATTTCGTTGTTCTGAAATGTTAACGACTCCTGGATGTCANC
AATATGGTTCAAGTTGTTGCCTCCANAAGGAGAGGTTTCAACTCATGAATATTCATAAGAGAGTCTTATCTGGCTCATGA
AGGAGANGTTTCAGAAGGCTATCACTGTGAGTAGCTAGCTCCATCGAAATTTTGATGTACTTGTATATTAGTTGCTTGAG
ATGTAGAAAGCTATTCAGGATGTTTAGTTTCTCTGGTCAGTCTGTGGTTGATGGTGCAAAACATATACTTATAGCCCTCT
CTAAATAGCATGAGAATTATCATAAGTTTGACANAATTGGCAGATAATTGGGTGATTGCTTTTATGTATCCAGCTATTCA
ATTTTATGCCCAGTGCCTTACTGAGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis