Browse Element(s) Details


OsAffx.24900.1.S1_at

Description tigr:9630.m05641
TID=OsAffx.24900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable phloem-specific lectin (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5680010/11F-box family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed
LOC_Os02g56760OsAffx.24899.1.S1_at10/112+34792412..34795604F-box domain containing protein
LOC_Os02g56770OsAffx.12673.1.S1_x_at11/112+34796215..34796659F-box domain containing protein, expressed
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24900.1.S1_at--642--4511NONE
GCCGACTCCTCAAGTACGTGATGGT
NONE
OsAffx.24900.1.S1_at--953--9931Chr02:34808300..34808324 (25 bp)
TACGTGATGGTCTATGCTGGATGGC
LOC_Os02g56800
OsAffx.24900.1.S1_at--417--8011Chr02:34808318..34808342 (25 bp)
GGATGGCGATGCTACTACTACTCTG
LOC_Os02g56800
OsAffx.24900.1.S1_at--873--9151Chr02:34808341..34808365 (25 bp)
TGCGCTGCGGCACATATTTGTTGAT
LOC_Os02g56800
OsAffx.24900.1.S1_at--617--8831Chr02:34808362..34808386 (25 bp)
TGATTTCTCTCTTTGTTACTACGTG
LOC_Os02g56800
OsAffx.24900.1.S1_at--1071--6231Chr02:34808446..34808470 (25 bp)
GATGGAAATCCGTTGCAACATAGAT
LOC_Os02g56800
OsAffx.24900.1.S1_at--137--1271Chr02:34808467..34808491 (25 bp)
AGATAGCAAAATGCTCTCCCCAAAC
LOC_Os02g56800
OsAffx.24900.1.S1_at--361--791Chr02:34808538..34808562 (25 bp)
ATGGGCTGGATACCCCGCTACAGGA
LOC_Os02g56800
OsAffx.24900.1.S1_at--685--6151Chr02:34808600..34808624 (25 bp)
GAGGTTGCCTTCACTTCGATCGATC
LOC_Os02g56800
OsAffx.24900.1.S1_at--664--8031Chr02:34808640..34808664 (25 bp)
GGAGTGCAGCGTACCCTCAGAAAAG
LOC_Os02g56800
OsAffx.24900.1.S1_at--1126--8531Chr02:34808685..34808709 (25 bp)
TGGAGTTGGGCGAGTTCTTCAATGA
LOC_Os02g56800
Target Sequence 
GCCGACTCCTCAAGTACGTGATGGTCTATGCTGGATGGCGATGCTACTACTACTCTGCGCTGCGGCACATATTTGTTGAT
TTCTCTCTTTGTTACTACGTGTTTAAACCCTTTCTTTACAACAGATTCGAAGAAGGTGCTGAACTCATAGATGTTTGCTG
GATGGAAATCCGTTGCAACATAGATAGCAAAATGCTCTCCCCAAACTCAACTTATGCTGCGTTCATGGTGTTCAAGATAG
CTGAAGGTTTCTATGGGCTGGATACCCCGCTACAGGAGGGAACGGTGAGCCTCGGAGGGAGGGAATCAAGACGCGAGGTT
GCCTTCACTTCGATCGATCCGCGTCCGCCTCAAGGGAGTGCAGCGTACCCTCAGAAAAGAGCTGATGGCTGGATGGAGGT
GGAGTTGGGCGAGTTCTTCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis