Browse Element(s) Details

Os.10826.1.S1_at

Description

gb:AK119450.1
DB_XREF= gi:37989073
TID=Os.10826.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D07, full insert sequence.
FL= gb:AK119450.1 gb:AK065919.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g56740	11/11	Nucleotidyl transferase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g56700	OsAffx.24898.1.S1_at	11/11	2	+	34758482..34760768	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56700	Os.20154.1.S1_at	11/11	2	+	34758482..34760768	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56710	NA	NA	2	+	34761583..34761991	hypothetical protein
LOC_Os02g56720	Os.55206.1.A1_at	11/11	2	+	34763775..34765299	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56730	Os.40360.1.S1_at	9/11	2	+	34769347..34772576	hypothetical protein
LOC_Os02g56730	Os.40360.1.S1_x_at	8/11	2	+	34769347..34772576	hypothetical protein
LOC_Os02g56730	Os.40855.5.S1_x_at	3/11	2	+	34769347..34772576	hypothetical protein
LOC_Os02g56740	Os.10826.1.S1_at	11/11	2	+	34778302..34787518	Nucleotidyl transferase family protein, expressed
LOC_Os02g56750	Os.54857.1.S1_at	11/11	2	+	34788376..34790766	F-box domain containing protein, expressed
LOC_Os02g56760	OsAffx.24899.1.S1_at	10/11	2	+	34792412..34795604	F-box domain containing protein
LOC_Os02g56770	OsAffx.12673.1.S1_x_at	11/11	2	+	34796215..34796659	F-box domain containing protein, expressed
LOC_Os02g56780	Os.47463.1.S1_x_at	5/11	2	+	34797090..34800790	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780	Os.14491.2.S1_x_at	4/11	2	+	34797090..34800790	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790	NA	NA	2	+	34803569..34806873	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800	OsAffx.24900.1.S1_at	10/11	2	+	34807723..34808821	F-box family protein, putative
LOC_Os02g56810	Os.6256.2.S1_at	5/11	2	+	34811890..34813900	F-box domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006446	biological_process	regulation of translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10826.1.S1_at--1039--521	1	Chr02:34786958..34786982 (25 bp)	GAATTTGTTTAACTGCCCATCTGTT	LOC_Os02g56740
Os.10826.1.S1_at--413--677	1	Chr02:34787025..34787049 (25 bp)	GTTAGATATGGCTCCTTTGGTTCTC	LOC_Os02g56740
Os.10826.1.S1_at--163--1025	1	Chr02:34787040..34787064 (25 bp)	TTTGGTTCTCTCATCTTTCTGCTGA	LOC_Os02g56740
Os.10826.1.S1_at--783--767	1	Chr02:34787093..34787117 (25 bp)	GGGTTCTTGTCCAAAAGGCGCCAAT	LOC_Os02g56740
Os.10826.1.S1_at--121--79	1	Chr02:34787123..34787147 (25 bp)	ATGTGGGTTGCGTAGATCCGGCACT	LOC_Os02g56740
Os.10826.1.S1_at--620--55	1	Chr02:34787138..34787162 (25 bp)	ATCCGGCACTAATCTTACCTCAAAA	LOC_Os02g56740
Os.10826.1.S1_at--1119--1051	1	Chr02:34787218..34787242 (25 bp)	TTCAGTTCCCTAAAAGCCTTCTATG	LOC_Os02g56740
Os.10826.1.S1_at--905--235	1	Chr02:34787230..34787254 (25 bp)	AAAGCCTTCTATGATTTGTGCAACA	LOC_Os02g56740
Os.10826.1.S1_at--334--241	1	Chr02:34787306..34787330 (25 bp)	AAACAGAACGTCCTTGAGAGCCAAA	LOC_Os02g56740
Os.10826.1.S1_at--16--1057	1	Chr02:34787403..34787427 (25 bp)	TTCTTCGTCGCATGTGCACTTGTAA	LOC_Os02g56740
Os.10826.1.S1_at--632--15	1	Chr02:34787427..34787451 (25 bp)	ATTTATCCACTTCTAATACGGGCTG	LOC_Os02g56740

Target Sequence

GAATTTGTTTAACTGCCCATCTGTTTCTTTGCACCCAGCACTTGCTCAAATCTTTAACAAAAGCTTAGTTAGATATGGCT
CCTTTGGTTCTCTCATCTTTCTGCTGAGAGATGTAGTGGGGAAGAAAGCAATGGAGGGTTCTTGTCCAAAAGGCGCCAAT
GGATCATGTGGGTTGCGTAGATCCGGCACTAATCTTACCTCAAAAGGGGCACGGTTTGTTTAAAGTACGTTCTTTTTTCT
CCCCAATCCTTTTAATTTTCTTCAGTTCCCTAAAAGCCTTCTATGATTTGTGCAACAACTGAACAAGAGGCTGCAAAATC
AAAGGTCGATATAAAAAGAGTGAAAAAAAAACAGAACGTCCTTGAGAGCCAAAAGTGGAAAAGCTTGTGAGAATGAGCAG
GGCCTGCGCTAAGCAACCTCTCTGTTCGGGCTTCCTTTGGCCCTGTTCTTCGTCGCATGTGCACTTGTAATTTATCCACT
TCTAATACGGGCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis