Browse Element(s) Details


Os.20154.1.S1_at

Description gb:AK119257.1
DB_XREF= gi:37988880
TID=Os.20154.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.20154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H06, full insert sequence.
FL= gb:AK063935.1 gb:AK119257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5670011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56670OsAffx.24897.1.S1_at9/112+34733944..34735265hypothetical protein
LOC_Os02g56680Os.6757.1.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56680OsAffx.24898.2.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56690OsAffx.24898.2.S1_at11/112+34751789..34753269NAD dependent epimerase/dehydratase family protein
LOC_Os02g56700OsAffx.24898.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56700Os.20154.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56710NANA2+34761583..34761991hypothetical protein
LOC_Os02g56720Os.55206.1.A1_at11/112+34763775..34765299NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20154.1.S1_at--1050--3511Chr02:34760299..34760323 (25 bp)
CATGAGGCGATCGAATGTCTGCAGC
LOC_Os02g56700
Os.20154.1.S1_at--207--771Chr02:34760313..34760337 (25 bp)
ATGTCTGCAGCGCAAGGGTCACCTG
LOC_Os02g56700
Os.20154.1.S1_at--816--1051Chr02:34760327..34760351 (25 bp)
AGGGTCACCTGCCTGTTGTCACGGT
LOC_Os02g56700
Os.20154.1.S1_at--402--7091Chr02:34760344..34760368 (25 bp)
GTCACGGTGGCACAACAGCGTGCAT
LOC_Os02g56700
Os.20154.1.S1_at--1074--2151Chr02:34760358..34760382 (25 bp)
ACAGCGTGCATGTTTGTAGAACCAA
LOC_Os02g56700
Os.20154.1.S1_at--24--10871Chr02:34760470..34760494 (25 bp)
TTGGCGGCGGCTTAAATTTGAAATT
LOC_Os02g56700
Os.20154.1.S1_at--1122--9711Chr02:34760539..34760563 (25 bp)
TTCAGCGTGGAAGAACCCGTACTAC
LOC_Os02g56700
Os.20154.1.S1_at--132--9251Chr02:34760570..34760594 (25 bp)
TCCTAGCTAGCCAGTTCATATCGTA
LOC_Os02g56700
Os.20154.1.S1_at--496--7411Chr02:34760604..34760628 (25 bp)
GTGTAACACAAGTTCTTTCTTTGGT
LOC_Os02g56700
Os.20154.1.S1_at--1145--3131Chr02:34760632..34760656 (25 bp)
AATTACATCTGTATCTCTACTTTGT
LOC_Os02g56700
Os.20154.1.S1_at--568--9531Chr02:34760647..34760671 (25 bp)
TCTACTTTGTTCATACTTCTACGAT
LOC_Os02g56700
Target Sequence 
CATGAGGCGATCGAATGTCTGCAGCGCAAGGGTCACCTGCCTGTTGTCACGGTGGCACAACAGCGTGCATGTTTGTAGAA
CCAAGATTTTATACACGGTGAACTTCCAAGTTCCAAAGATAATAAAAGCAGAGACATGACAGCGGCGGCATATGCATAAC
AAATTTATATTTTGGCGGCGGCTTAAATTTGAAATTTTGTCTACCTGAAGAATAAAGTAGGAGTACCATATAAAGGGAAG
TTCAGCGTGGAAGAACCCGTACTACTACTACTCCTAGCTAGCCAGTTCATATCGTAAATCTGCATGTGTAACACAAGTTC
TTTCTTTGGTATGAATTACATCTGTATCTCTACTTTGTTCATACTTCTACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis