Browse Element(s) Details


OsAffx.24898.2.S1_at

Description tigr:9630.m05627
TID=OsAffx.24898.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cinnamoyl CoA reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5669011/11NAD dependent epimerase/dehydratase family protein
LOC_Os02g566801/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56660Os.31312.5.S1_x_at4/112+34727274..34730692retrotransposon protein, putative, unclassified
LOC_Os02g56660Os.31312.2.S1_x_at2/112+34727274..34730692retrotransposon protein, putative, unclassified
LOC_Os02g56670OsAffx.24897.1.S1_at9/112+34733944..34735265hypothetical protein
LOC_Os02g56680Os.6757.1.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56680OsAffx.24898.2.S1_at1/112+34736625..34738103NmrA-like family protein, expressed
LOC_Os02g56690OsAffx.24898.2.S1_at11/112+34751789..34753269NAD dependent epimerase/dehydratase family protein
LOC_Os02g56700OsAffx.24898.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56700Os.20154.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56710NANA2+34761583..34761991hypothetical protein
LOC_Os02g56720Os.55206.1.A1_at11/112+34763775..34765299NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24898.2.S1_at--80--2252Chr02:34752378..34752401 (24 bp)
AAATTCTGCCGCCAAACCGACGTAT
LOC_Os02g56690
OsAffx.24898.2.S1_at--69--2631Chr02:34752392..34752504 (25 bp)
AACCGACGTATACTGCTACGCGAAG
LOC_Os02g56690
OsAffx.24898.2.S1_at--392--4251Chr02:34752572..34752596 (25 bp)
CCTGCGTGACGGTCGGGCCAATCTT
LOC_Os02g56690
OsAffx.24898.2.S1_at--532--6331Chr02:34752795..34752819 (25 bp)
GATGCTCAAGGAACTTTTCCCACAG
LOC_Os02g56690
OsAffx.24898.2.S1_at--1028--1791Chr02:34752821..34753076 (25 bp)
ACCCCGTCACTTCCAAGTGCAAGGA
LOC_Os02g56690
OsAffx.24898.2.S1_at--1123--1111Chr02:34753068..34753091 (24 bp)
AGTGCAAGGACGATGGGAATCCGAT
LOC_Os02g56690
OsAffx.24898.2.S1_at--113--7911Chr02:34753082..34753106 (25 bp)
GGAATCCGATGGTGGAACCGTACAA
LOC_Os02g56690
OsAffx.24898.2.S1_at--152--6531Chr02:34753129..34753153 (25 bp)
GATTTGGGCTTCGAATTCACACCAA
LOC_Os02g56690
OsAffx.24898.2.S1_at--860--8271Chr02:34753135..34753159 (25 bp)
GGCTTCGAATTCACACCAATGAGGA
LOC_Os02g56690
OsAffx.24898.2.S1_at--344--5331Chr02:34753158..34753182 (25 bp)
GAAGTGTCTGTATGACGCAGTCGTA
LOC_Os02g56690
OsAffx.24898.2.S1_at--633--5791Chr02:34753171..34753195 (25 bp)
GACGCAGTCGTATGCATGCAACAGA
LOC_Os02g56690
Target Sequence 
AAATTCTGCCGCCAAACCGACGTATACTGCTACGCGAAGACGATGGCGGAGAAGGCGGCGGAGGAGGAGGCGGCAAAGCG
AGGCGTGCAGCTGGCGGTGGTGCTGCCCTGCGTGACGGTCGGGCCAATCTTGCACCCGGCCATCAACACCAGCATCAACC
ACGTCGTCCGCTACCTCACGGGCGCCGCGCCCACCTACCCGAACGCCGTCGCGGCCTACGTCGACGTCCGCGACGTCGCC
CGCGCGCACGCACTCGTCTACGAGCGCCACGACGCCCGCGGCCGCTACCTCTGCATCGGCGCCGTGCTCCACCGCGCCCA
TCTCCTCCAGATGCTCAAGGAACTTTTCCCACAGTACCCCGTCACTTCCAAGTGCAAGGACGATGGGAATCCGATGGTGG
AACCGTACAAGTTCTCGAACCAGAGGCTCAAGGATTTGGGCTTCGAATTCACACCAATGAGGAAGTGTCTGTATGACGCA
GTCGTATGCATGCAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24898.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis