Browse Element(s) Details


Os.55206.1.A1_at

Description gb:AK107665.1
DB_XREF= gi:32992874
TID=Os.55206.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H02, full insert sequence.
FL= gb:AK107665.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5672011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56690OsAffx.24898.2.S1_at11/112+34751789..34753269NAD dependent epimerase/dehydratase family protein
LOC_Os02g56700OsAffx.24898.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56700Os.20154.1.S1_at11/112+34758482..34760768NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56710NANA2+34761583..34761991hypothetical protein
LOC_Os02g56720Os.55206.1.A1_at11/112+34763775..34765299NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55206.1.A1_at--67--1892Chr02:34764741..34764765 (25 bp)
ACGATGGGCCCCATGCTGCAGCGTG
LOC_Os02g56720
Os.55206.1.A1_at--1109--4371Chr02:34764810..34764834 (25 bp)
GCCAAGAAGTCGTACCCGAACGCCG
LOC_Os02g56720
Os.55206.1.A1_at--632--7031Chr02:34764980..34765107 (25 bp)
GTACACCATCGCTTCAAAGTGTGAT
LOC_Os02g56720
Os.55206.1.A1_at--228--4511Chr02:34765119..34765143 (25 bp)
GCCGATGGTGAAGCCGTATGAGTTT
LOC_Os02g56720
Os.55206.1.A1_at--348--8531Chr02:34765127..34765151 (25 bp)
TGAAGCCGTATGAGTTTTCGAACCA
LOC_Os02g56720
Os.55206.1.A1_at--387--4931Chr02:34765169..34765193 (25 bp)
GCTTGGAATTCACCCCGTTGAGGAA
LOC_Os02g56720
Os.55206.1.A1_at--766--6191Chr02:34765188..34765213 (25 bp)
GAGGAAGAGTTGTACGACGCAGTCA
LOC_Os02g56720
Os.55206.1.A1_at--457--6991Chr02:34765200..34765224 (25 bp)
GTACGACGCAGTCATGTGCATGCAA
LOC_Os02g56720
Os.55206.1.A1_at--309--7331Chr02:34765215..34765239 (25 bp)
GTGCATGCAACGAAACGGTCACCTG
LOC_Os02g56720
Os.55206.1.A1_at--265--2391Chr02:34765227..34765251 (25 bp)
AAACGGTCACCTGCCTGTCGTCTTG
LOC_Os02g56720
Os.55206.1.A1_at--904--8711Chr02:34765242..34765266 (25 bp)
TGTCGTCTTGCCATAGCAGGAGTGT
LOC_Os02g56720
Target Sequence 
ACGATGGGCCCCATGCTGCAGCGTGCGCTCAACCTCAGCAGCACGCACGTCGCCAACTACCTCACCGGCGCCAAGAAGTC
GTACCCGAACGCCGTCGCGGCCTACGTCGACGTCCGCGACGTCGCCCGCGCGCACGCCCTCGTCTACGAGCGCCACGACG
CGCGCGGCCGCTACCTCTGCATCGGCGCCGTGCTGCACCGCGCCCAGCTCCTCCAGATGCTCATGGACCTCTTCCCCCAG
TACACCATCGCTTCAAAGTGTGATGACAAGGGGAAGCCGATGGTGAAGCCGTATGAGTTTTCGAACCAGAGGCTCAAGGA
TTTGGGCTTGGAATTCACCCCGTTGAGGAAGAGTTGTACGACGCAGTCATGTGCATGCAACGAAACGGTCACCTGCCTGT
CGTCTTGCCATAGCAGGAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55206.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis