Browse Element(s) Details


OsAffx.12673.1.S1_x_at

Description tigr:9630.m05638
TID=OsAffx.12673.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5677011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed
LOC_Os02g56760OsAffx.24899.1.S1_at10/112+34792412..34795604F-box domain containing protein
LOC_Os02g56770OsAffx.12673.1.S1_x_at11/112+34796215..34796659F-box domain containing protein, expressed
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12673.1.S1_x_at--18--3491Chr02:34796245..34796269 (25 bp)
CAGGATGTCCTCCAGAGAGTGATCC
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--1054--7991Chr02:34796247..34796271 (25 bp)
GGATGTCCTCCAGAGAGTGATCCCC
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--775--4351Chr02:34796256..34796280 (25 bp)
CCAGAGAGTGATCCCCCTCGAGACG
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--342--9291Chr02:34796338..34796362 (25 bp)
TCCGACGTCGTCTGGGGCAAGTTCC
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--27--7611Chr02:34796352..34796376 (25 bp)
GGGCAAGTTCCAGCCAGACGATTCG
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--948--5171Chr02:34796354..34796378 (25 bp)
GCAAGTTCCAGCCAGACGATTCGTC
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--507--1231Chr02:34796357..34796381 (25 bp)
AGTTCCAGCCAGACGATTCGTCCCT
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--553--1691Chr02:34796363..34796387 (25 bp)
AGCCAGACGATTCGTCCCTGCAGCT
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--942--9031Chr02:34796381..34796577 (25 bp)
TGCAGCTCGCCGACGGGCATGTGGT
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--904--9331Chr02:34796330..34796583 (25 bp)
TCGCCGACGGGCATGTGGTTGGACA
LOC_Os02g56770
OsAffx.12673.1.S1_x_at--973--1031Chr02:34796598..34796622 (25 bp)
AGGTGCTATATGCTCTCGGCCAGAG
LOC_Os02g56770
Target Sequence 
CAGGATGTCCTCCAGAGAGTGATCCCCCTCGAGACGCCGCGGGACGCATGCCGCGCCGCCGCCGTCTCCCCGGCCTTCCG
CGCCATCGCCGACTCCGACGTCGTCTGGGGCAAGTTCCAGCCAGACGATTCGTCCCTGCAGCTCGCCGACGGGCATGTGG
TTGGACAGGGGGACCGGGGCCAGGTGCTATATGCTCTCGGCCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12673.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis