Browse Element(s) Details


Os.56073.1.S1_at

Description gb:AK109212.1
DB_XREF= gi:32994421
TID=Os.56073.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D04, full insert sequence.
FL= gb:AK109212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5683010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g394609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g120504/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56830Os.56073.1.S1_at10/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.2.S1_x_at8/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_x_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56830Os.46557.1.S1_at5/112+34822623..34825453transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56840Os.11505.1.S1_at11/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56840Os.56351.1.S1_at1/112+34827998..34830159F-box domain containing protein, expressed
LOC_Os02g56850Os.52324.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56850Os.4154.1.S1_at11/112+34831877..34837982Glutathione reductase, cytosolic, putative, expressed
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56073.1.S1_at--556--9513Chr06:23432931..23432955 (25 bp)
TCTTGGAACCCAGCCCTAGAGAAGA
LOC_Os06g39460
Os.56073.1.S1_at--356--10734Chr09:6805518..6805542 (25 bp)
TTGCATGAGCACAACACTCCTGAGT
LOC_Os09g12050
Os.56073.1.S1_at--423--274Chr09:6805613..6805637 (25 bp)
ATATGTCTGCTTAACAAAGTCCCAA
LOC_Os09g12050
Os.56073.1.S1_at--464--3294Chr09:6805698..6805722 (25 bp)
CAAAGTGGAGCTTCATGGAATAACC
LOC_Os09g12050
Os.56073.1.S1_at--808--6034Chr09:6805724..6805748 (25 bp)
GAGATGCATCATTGAGGCTGAGCCT
LOC_Os09g12050
Os.56073.1.S1_at--475--4753Chr06:23433192..23433216 (25 bp)
GCTGAGCCTGCTATATGGAACAATA
LOC_Os06g39460
Os.56073.1.S1_at--783--3734Chr09:6805861..6805885 (25 bp)
CTAAAGCCAAGAAGTTTCGCACCAA
NONE
Os.56073.1.S1_at--267--3294Chr09:6805883..6805907 (25 bp)
CAAATCTTTCCCTCTATTTGAGGCC
NONE
Os.56073.1.S1_at--628--10454Chr09:6805900..6805925 (25 bp)
TTGAGGCCTTGGAGAACTTTACGAT
NONE
Os.56073.1.S1_at--999--5472Chr09:6805914..6806036 (25 bp)
GAACTTTACGATGGACATACTGCAG
NONE
Os.56073.1.S1_at--540--8133Chr09:6806024..6806045 (22 bp)
GGACATACTGCAGAAGGAACCTACA
NONE
Target Sequence 
TCTTGGAACCCAGCCCTAGAGAAGATTCTTGTTGAGTTATTGCATGAGCACAACACTCCTGAGTATAGGGGTCAGAATGG
ATGGACTTCAGAAGCTTGGAACAAAATCGTGAAGGAATTCCATGAGAAGGACATATATGTCTGCTTAACAAAGTCCCAAA
TCTAAGAAAAGGAGAAAGAGCTAAAAAGAGAATATAGGATGCTGAAAGAGGCTAGAAAACAAAGTGGAGCTTCATGGAAT
AACCAGAGATGCATCATTGAGGCTGAGCCTGCTATATGGAACAATATAATCATCTCATTTCCTAAAGCCAAGAAGTTTCG
CACCAAATCTTTCCCTCTATTTGAGGCCTTGGAGAACTTTACGATGGACATACTGCAGAAGGAACCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis