Browse Element(s) Details


OsAffx.12676.1.S1_at

Description tigr:9630.m05652
TID=OsAffx.12676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lecithin:cholesterol acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5691011/11Sterol esterification protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56870OsAffx.12675.1.S1_at11/112+34855907..34856271hypothetical protein
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12676.1.S1_at--518--6931Chr02:34878931..34878955 (25 bp)
GTAGGCTATTATTTTGCACCGAGTG
LOC_Os02g56910
OsAffx.12676.1.S1_at--751--5311Chr02:34878857..34878880 (24 bp)
GAAGGGTCTCTACTATCAAGGCAGA
LOC_Os02g56910
OsAffx.12676.1.S1_at--756--7071Chr02:34878448..34878472 (25 bp)
GTAATTCTGTTACTGGAAAGCCCAA
LOC_Os02g56910
OsAffx.12676.1.S1_at--776--5551Chr02:34878433..34878457 (25 bp)
GAAAGCCCAACAATTCCAGCGGAGA
LOC_Os02g56910
OsAffx.12676.1.S1_at--249--8171Chr02:34878336..34878431 (25 bp)
GGAACGGTATCCTACAATTCTCTCT
LOC_Os02g56910
OsAffx.12676.1.S1_at--781--10071Chr02:34878109..34878295 (25 bp)
TAGGGCTCCGCAGGCAGAACATGAT
LOC_Os02g56910
OsAffx.12676.1.S1_at--1140--5271Chr02:34878061..34878085 (25 bp)
GAATGTCGACCACCATGTAGGCCAG
LOC_Os02g56910
OsAffx.12676.1.S1_at--888--7591Chr02:34878037..34878061 (25 bp)
GGGCATACTCCCAAACATGACGAGG
LOC_Os02g56910
OsAffx.12676.1.S1_at--703--1431Chr02:34877955..34877979 (25 bp)
AGAACAGCCGTCTGGGAGCTTGATA
LOC_Os02g56910
OsAffx.12676.1.S1_at--409--591Chr02:34877632..34877656 (25 bp)
ATGCCAGTACTGATGCGTGAGTTGT
LOC_Os02g56910
OsAffx.12676.1.S1_at--536--4991Chr02:34877594..34877618 (25 bp)
GCATGACATGCACCCTGATGCGAAA
LOC_Os02g56910
Target Sequence 
GTAGGCTATTATTTTGCACCGAGTGGAAAACCATATCCAGATAACTGGATAATAACTGATATTATTTATGAATTTGAAGG
GTCTCTACTATCAAGGCAGAATAAAATAGTAACACAATTTATTCTTTCCAGATCAGGTAATTCTGTTACTGGAAAGCCCA
ACAATTCCAGCGGAGACGGAACGGTATCCTACAATTCTCTCTCATGGTGCAAGAACTGGCTTGGGCCAAAAGTGAACATA
ACTAGGGCTCCGCAGGCAGAACATGATGGATCTGATTTACAAACAAAGATGAATGTCGACCACCATGTAGGCCAGGGCAT
ACTCCCAAACATGACGAGGACTCCACATGTGAAGTACATAACCTACTTTGAAGATGCTGAGAGCATTCCGGGATGGAGAA
CAGCCGTCTGGGAGCTTGATAAAGCAAATCACAGGAACATTGTTAGGATGCCAGTACTGATGCGTGAGTTGTGGCTTGAA
ATGTGGCATGACATGCACCCTGATGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis