Browse Element(s) Details


Os.52320.1.S1_at

Description gb:AK066382.1
DB_XREF= gi:32976400
TID=Os.52320.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013064K05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064K05, full insert sequence.
FL= gb:AK066382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g569509/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52320.1.S1_at--833--3311Chr02:34903409..34903433 (25 bp)
CACATACTTTTAGTTCCTTTCCTAT
LOC_Os02g56950
Os.52320.1.S1_at--439--6411Chr02:34903368..34903392 (25 bp)
GATCTGCACCAGTTGCTTCAAGGAA
LOC_Os02g56950
Os.52320.1.S1_at--93--5151Chr02:34902544..34902568 (25 bp)
GCAATCATTAGAGAGCGAACCGTAC
LOC_Os02g56950
Os.52320.1.S1_at--360--10211NONE
TATTATGGTTTCTACCTCCAGTTCT
NONE
Os.52320.1.S1_at--920--3811Chr02:34902503..34902527 (25 bp)
CTCCAGTTCTTACTGCTGCAGCAAT
LOC_Os02g56950
Os.52320.1.S1_at--145--4171Chr02:34902391..34902500 (25 bp)
CGCCACGGTCAAGCTTGTTTAAGAT
LOC_Os02g56950
Os.52320.1.S1_at--999--7351Chr02:34902340..34902361 (22 bp)
GTGAAGCTGCTTCCAAAGACCGAAA
LOC_Os02g56950
Os.52320.1.S1_at--1001--751Chr02:34902036..34902060 (25 bp)
ATGTCTCTACACATTCCATGTTCAA
LOC_Os02g56950
Os.52320.1.S1_at--1074--5591Chr02:34902000..34902024 (25 bp)
GACAATTCAGTAGTGGCAGTAGCCA
LOC_Os02g56950
Os.52320.1.S1_at--136--4432Chr02:21338032..21338052 (21 bp)
GCCATGGGCCACAGTTCAAGACAGT
NONE
Os.52320.1.S1_at--730--8411NONE
GGCCGCTGTAGTTATTTCCATGTAT
NONE
Target Sequence 
CACATACTTTTAGTTCCTTTCCTATATCAAAACAATATGCTGATCTGCACCAGTTGCTTCAAGGAACAACTCAGGATGAA
TGCCAAGACAAGCTTCTTGGTTTCAAGGAGATGGATATTTGTGAGTATGCAAGGCAATCATTAGAGAGCGAACCGTACAT
ATTATGGTTTCTACCTCCAGTTCTTACTGCTGCAGCAATGCCGCCACGGTCAAGCTTGTTTAAGATATACCTTGTTGAAA
TAGATAAGCAACTCGGTGAAGCTGCTTCCAAAGACCGAAAATGCAATTGCGGAGGAGATGGAATAGACCAGCATCAAAAC
TGTGAGATTTCTGAAAGGATTCAATGTCTCTACACATTCCATGTTCAAAGAACTCAACTGACAATTCAGTAGTGGCAGTA
GCCATGGGCCACAGTTCAAGACAGTGCAGGAGATTTGCAGTATGCACTGATATTTCAGAGTAATTTATTTTCCAAACTGG
CCGCTGTAGTTATTTCCATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis