Browse Element(s) Details


OsAffx.12677.1.S1_at

Description tigr:9630.m05665
TID=OsAffx.12677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AT5g37360MNJ8_150
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5703011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12677.1.S1_at--928--2771Chr02:34922519..34922543 (25 bp)
AAGAGCTGACTCACTTGGCATTCCT
LOC_Os02g57030
OsAffx.12677.1.S1_at--58--8291Chr02:34922535..34922559 (25 bp)
GGCATTCCTTCTATTGAAACTGTGA
LOC_Os02g57030
OsAffx.12677.1.S1_at--622--211Chr02:34922582..34922606 (25 bp)
ATTTGATATCGTCAACGCTTGCCCA
LOC_Os02g57030
OsAffx.12677.1.S1_at--1078--2591Chr02:34922595..34922619 (25 bp)
AACGCTTGCCCATGCATATATGTTA
LOC_Os02g57030
OsAffx.12677.1.S1_at--750--5211Chr02:34922622..34922646 (25 bp)
GAATTCACCCTATGATACTTACTAG
LOC_Os02g57030
OsAffx.12677.1.S1_at--9--6491Chr02:34922669..34922693 (25 bp)
GATACGGTTCCATGCTGACAGATTT
LOC_Os02g57030
OsAffx.12677.1.S1_at--655--5651Chr02:34922685..34922709 (25 bp)
GACAGATTTGTTTTCCCAGCGTCAA
LOC_Os02g57030
OsAffx.12677.1.S1_at--721--10051Chr02:34922760..34922784 (25 bp)
TAGTTCAGACATACCCATTCCATAC
LOC_Os02g57030
OsAffx.12677.1.S1_at--137--6771Chr02:34922788..34922812 (25 bp)
GTTAATTCTTTATTGGTTCTCTCTG
LOC_Os02g57030
OsAffx.12677.1.S1_at--643--2311Chr02:34922816..34922840 (25 bp)
AAAGTGCTGCACTCGAATAGTCAAA
LOC_Os02g57030
OsAffx.12677.1.S1_at--466--3974Chr04:23352446..23352497 (24 bp)
CGAATAGTCAAATACTCCCTCCATT
NONE
Target Sequence 
AAGAGCTGACTCACTTGGCATTCCTTCTATTGAAACTGTGAAATATCATCCACAGGTCTGTGGATTTGATATCGTCAACG
CTTGCCCATGCATATATGTTAAAGAATTCACCCTATGATACTTACTAGGGGGGACAAATCTGATGTCAGTGATACGGTTC
CATGCTGACAGATTTGTTTTCCCAGCGTCAAACACCCTGGGGGCTGTTAGTTTATACCAACAGATGGATGGTCATATTTA
ATAGTTCAGACATACCCATTCCATACTAAGTTAATTCTTTATTGGTTCTCTCTGAAGAAAGTGCTGCACTCGAATAGTCA
AATACTCCCTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis