Browse Element(s) Details


Os.52783.1.A1_x_at

Description gb:AK102246.1
DB_XREF= gi:32987455
TID=Os.52783.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088F01, full insert sequence.
FL= gb:AK102246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5708011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed
LOC_Os02g57090OsAffx.24903.1.S1_at11/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57090Os.47315.1.S1_x_at1/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52783.1.A1_x_at--807--5231Chr02:34939681..34939705 (25 bp)
GAATAGATCAGGACCCATCCGGATG
LOC_Os02g57080
Os.52783.1.A1_x_at--225--4911Chr02:34939648..34939672 (25 bp)
GCTTGCCTCATTTTACCGGTCTAGA
LOC_Os02g57080
Os.52783.1.A1_x_at--634--6531Chr02:34939526..34939550 (25 bp)
GATTTCTTTTACCTCTCGTTGATTC
LOC_Os02g57080
Os.52783.1.A1_x_at--841--10691Chr02:34939501..34939525 (25 bp)
TTGCCTCCGGTTAGTGTACAGTTTT
LOC_Os02g57080
Os.52783.1.A1_x_at--333--2131Chr02:34939484..34939508 (25 bp)
ACAGTTTTCCCGACAATCCTGGTGA
LOC_Os02g57080
Os.52783.1.A1_x_at--445--10551Chr02:34939439..34939463 (25 bp)
TTCATTTGCCTTAATTTCTGCCTCC
LOC_Os02g57080
Os.52783.1.A1_x_at--595--8271Chr02:34939386..34939410 (25 bp)
GGCAGGTGCTCTCTAATTTTGCGAT
LOC_Os02g57080
Os.52783.1.A1_x_at--252--171Chr02:34939371..34939395 (25 bp)
ATTTTGCGATTTGCGGTTCATTCCT
LOC_Os02g57080
Os.52783.1.A1_x_at--586--91Chr02:34939352..34939376 (25 bp)
ATTCCTCATGCATCTCTGATTTGTG
LOC_Os02g57080
Os.52783.1.A1_x_at--229--6691Chr02:34939239..34939263 (25 bp)
GTTGCCGAGGCTGTACATGTCAGGT
LOC_Os02g57080
Os.52783.1.A1_x_at--105--7751Chr02:34939217..34939241 (25 bp)
GGTGTTACCGTGTTAGCATTCCTTC
LOC_Os02g57080
Target Sequence 
GAATAGATCAGGACCCATCCGGATGAAGAAAAAGCTTGCCTCATTTTACCGGTCTAGAGGTAGCTTCAGCGAGCATGGCC
AGCTGCCTCGCCATTGATTNATAATCTAGTGTTAGACTGTTAGCTTCAGTTGACTTGGGATTGAGGCTGTGGGGGGATTT
CTTTTACCTCTCGTTGATTCTTGCCTCCGGTTAGTGTACAGTTTTCCCGACAATCCTGGTGACCGCCAGTATAGATGATG
TTTTCATTTGCCTTAATTTCTGCCTCCCCAAAGAAGCAAATGAGGATATGGGGTTGGCAGGTGCTCTCTAATTTTGCGAT
TTGCGGTTCATTCCTCATGCATCTCTGATTTGTGTAATCTGGGTAGGAAAATTTCTTGCCAGAATTCTGGGCATCATGTT
GTAATGGGTTGTTAAAGAATTCGATTATTCGACCCTCCCCTCGTTGCCGAGGCTGTACATGTCAGGTGTTACCGTGTTAG
CATTCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52783.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis