Browse Element(s) Details


Os.9894.1.S1_at

Description gb:AK071879.1
DB_XREF= gi:32981902
TID=Os.9894.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.9894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042C23, full insert sequence.
FL= gb:AK104549.1 gb:AK071879.1 gb:AK059078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5712011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57090OsAffx.24903.1.S1_at11/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57090Os.47315.1.S1_x_at1/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed
LOC_Os02g57140Os.53873.1.S1_x_at11/112+34985381..34990734expressed protein
LOC_Os02g57140Os.51285.1.S1_at1/112+34985381..34990734expressed protein
LOC_Os02g57150Os.16820.1.S1_at10/112+34996907..34998925Tubulin-specific chaperone A, putative, expressed
LOC_Os02g57160Os.11619.1.A1_at11/112+34999045..35003489ABC1 family protein, expressed
LOC_Os02g57170Os.50935.1.S1_at11/112+35005524..35007516expressed protein
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9894.1.S1_at--1033--10811Chr02:34982671..34982695 (25 bp)
TTGTCGATATTTCTTCCTGCACTCC
LOC_Os02g57120
Os.9894.1.S1_at--694--1811Chr02:34982699..34982723 (25 bp)
ACGCCTTCGAAAACCATAGTCCATA
LOC_Os02g57120
Os.9894.1.S1_at--500--10051Chr02:34982715..34983169 (25 bp)
TAGTCCATATGTCCGCAAGGCTGTG
LOC_Os02g57120
Os.9894.1.S1_at--845--7931Chr02:34983496..34983520 (25 bp)
GGATACGTACCTGAAGCTCGGGCCA
LOC_Os02g57120
Os.9894.1.S1_at--509--4351Chr02:34983517..34983541 (25 bp)
GCCAGCGTTCTTGCCGTATTTGGAG
LOC_Os02g57120
Os.9894.1.S1_at--7--7251Chr02:34983592..34983616 (25 bp)
GTCCCAGACGAGCTTTATTGCTGTG
LOC_Os02g57120
Os.9894.1.S1_at--1076--8651Chr02:34983613..34983637 (25 bp)
TGTGGACGCTTGATGCAGGCAACCC
LOC_Os02g57120
Os.9894.1.S1_at--504--2771Chr02:34983661..34983685 (25 bp)
AAGACGCAATGCTTGTTTCAACGAT
LOC_Os02g57120
Os.9894.1.S1_at--379--1731Chr02:34983681..34983705 (25 bp)
ACGATAACTCTCCACCGTTGGTTAG
LOC_Os02g57120
Os.9894.1.S1_at--619--10091Chr02:34983870..34983894 (25 bp)
TAGGCAGTGCAGATTGTACAACCAA
LOC_Os02g57120
Os.9894.1.S1_at--1001--1171Chr02:34983907..34983931 (25 bp)
AGTACTAGCATTTTCATCCTGTTTG
LOC_Os02g57120
Target Sequence 
TTGTCGATATTTCTTCCTGCACTCCTGGACGCCTTCGAAAACCATAGTCCATATGTCCGCAAGGCTGTGGTGTTGTGCTT
GGTGGATACGTACCTGAAGCTCGGGCCAGCGTTCTTGCCGTATTTGGAGAGGCTGGACAGCGCCCAGCTGCAGCTGGTAA
CCACGTACGCCAGCAGGCTGTCCCAGACGAGCTTTATTGCTGTGGACGCTTGATGCAGGCAACCCAGCAGCAACAGCAGC
AGCAGCAGAAGACGCAATGCTTGTTTCAACGATAACTCTCCACCGTTGGTTAGCCTTAGCCTTCTCTTTCTTTTTATTTA
TGGCCATGTGTGCACAATAAGGGCAGCAGCTCAGCTCTCTCCCCCTTTCTCCAAATTTATGAGCATAGTAGAATAGATCT
CTATACTGTAAATCATAATTACCTGTTTTTACTACCCAGAAATGAGATACATGCATGTAGGCAGTGCAGATTGTACAACC
AATGGAAGAATAGTAGTACTAGCATTTTCATCCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis