Browse Element(s) Details


Os.49569.1.S1_at

Description gb:AK099758.1
DB_XREF= gi:32984967
TID=Os.49569.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093J01, full insert sequence.
FL= gb:AK099758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5720011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57180Os.10342.1.S1_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.10342.1.S1_s_at11/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_s_at10/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57180Os.7287.1.S1_x_at2/112+35007703..35011778NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed
LOC_Os02g57200Os.49569.1.S1_at11/112+35035214..35040570expressed protein
LOC_Os02g57210OsAffx.12678.1.S1_x_at11/112+35047045..35048474hypothetical protein
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49569.1.S1_at--290--1291Chr02:35039984..35040008 (25 bp)
AGATCTGTGGCCGAGCATGCAGGCT
LOC_Os02g57200
Os.49569.1.S1_at--873--911Chr02:35040004..35040028 (25 bp)
AGGCTCCGGGTCATTCTGCAGCAGA
LOC_Os02g57200
Os.49569.1.S1_at--123--111Chr02:35040016..35040040 (25 bp)
ATTCTGCAGCAGACCGACTGAATGA
LOC_Os02g57200
Os.49569.1.S1_at--1071--2651Chr02:35040045..35040069 (25 bp)
AAGCCTCATGTTCTTCCTGATGGAT
LOC_Os02g57200
Os.49569.1.S1_at--651--831Chr02:35040064..35040088 (25 bp)
ATGGATCACTGAAGCGTGCGCCCAA
LOC_Os02g57200
Os.49569.1.S1_at--424--2731Chr02:35040117..35040141 (25 bp)
AAGAAACTGTTCAAGTCCGGCGATG
LOC_Os02g57200
Os.49569.1.S1_at--283--6231Chr02:35040138..35040162 (25 bp)
GATGGCGCCCTGGATCTAAACCAGA
LOC_Os02g57200
Os.49569.1.S1_at--521--10071Chr02:35040272..35040296 (25 bp)
TAGTCCAGAAAACCTTGTGTCAGTC
LOC_Os02g57200
Os.49569.1.S1_at--983--51Chr02:35040472..35040496 (25 bp)
ATTGAACCATATATGCTCGCATGCT
LOC_Os02g57200
Os.49569.1.S1_at--398--6531Chr02:35040520..35040544 (25 bp)
GATTTGCCATGAACCAATTGGTGAT
LOC_Os02g57200
Os.49569.1.S1_at--699--3171Chr02:35040535..35040559 (25 bp)
AATTGGTGATCATCCATCGATATGA
LOC_Os02g57200
Target Sequence 
AGATCTGTGGCCGAGCATGCAGGCTCCGGGTCATTCTGCAGCAGACCGACTGAATGAAATGAAGCCTCATGTTCTTCCTG
ATGGATCACTGAAGCGTGCGCCCAAGAGGAAGGCGGAGTGGCGCGCCTTCAGCAAGAAACTGTTCAAGTCCGGCGATGGC
GCCCTGGATCTAAACCAGANGGGCTGCTGCCATCGCCGGACCCCTCGGTGNCCATTGGGACTAGNTGACACCGGTGCATC
GTCTGAAGAGACNNGGNTTCAGACAGTTGAGTGTATCTCTANGTANGTAGTGATNTAGTCCAGAAAACCTTGTGTCAGTC
TGAANGCTGCCTGTATGATTCCGCNTGCTGAAGCTGGTAAACAGTAGCAGTATGATCAAAGGTAAANATCGAGTTAAATT
TCAGCCAAGTGATTGGATTCAGTTTTTGTAAACATGCATCGATCTGAATTCTGATTACATCCTGTGTAATATATTNATTG
GCTTGTGTAATCCAAAAAGATTGAACCATATATGCTCGCATGCTGAAAAGGAATTGCGAGTTTTTGTGATTTGCCATGAA
CCAATTGGTGATCATCCATCGATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis