Browse Element(s) Details


Os.18424.1.S1_at

Description gb:AK073919.1
DB_XREF= gi:32983942
TID=Os.18424.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071G14, full insert sequence.
FL= gb:AK073919.1 gb:AK104007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5722011/11Actin-related protein 2/3 complex subunit 1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57190Os.4855.1.S1_at11/112+35022700..35034598myosin XI, putative, expressed
LOC_Os02g57200Os.49569.1.S1_at11/112+35035214..35040570expressed protein
LOC_Os02g57210OsAffx.12678.1.S1_x_at11/112+35047045..35048474hypothetical protein
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005885cellular_componentArp2/3 protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18424.1.S1_at--426--371Chr02:35051763..35051787 (25 bp)
ATCAAAGCCTCGTGGTGGTGTTCAT
LOC_Os02g57220
Os.18424.1.S1_at--987--4952Chr04:24325093..24325114 (22 bp)
GCATAACTTGCATCGTGCCATTGAG
NONE
Os.18424.1.S1_at--492--8231Chr02:35051373..35051397 (25 bp)
GGCAACGAGCCCTGCAGGTTTTAAA
LOC_Os02g57220
Os.18424.1.S1_at--370--4931Chr02:35051325..35051349 (25 bp)
GCTTGTTTTTTGTTGTACCTGTACA
LOC_Os02g57220
Os.18424.1.S1_at--145--2371Chr02:35051299..35051323 (25 bp)
AAACCATTTCTTTAGCTGGCTCTTT
LOC_Os02g57220
Os.18424.1.S1_at--457--10831Chr02:35051261..35051285 (25 bp)
TTGGGATCTCTATAAGTTGGCTTCA
LOC_Os02g57220
Os.18424.1.S1_at--352--9851Chr02:35051164..35051188 (25 bp)
TAAATTCGACATCTCATCCCAAGTG
LOC_Os02g57220
Os.18424.1.S1_at--182--2871Chr02:35051144..35051168 (25 bp)
AAGTGTTTCGCGGTATTCTGTGTAA
LOC_Os02g57220
Os.18424.1.S1_at--638--9791Chr02:35051117..35051141 (25 bp)
TAACCACACGTGGAATTCACCCGAA
LOC_Os02g57220
Os.18424.1.S1_at--43--3151Chr02:35051104..35051128 (25 bp)
AATTCACCCGAATGCTTTCACTTTT
LOC_Os02g57220
Os.18424.1.S1_at--966--351Chr02:35051070..35051094 (25 bp)
ATAATTGCTCGTCATCCTGTTTGGT
LOC_Os02g57220
Target Sequence 
ATCAAAGCCTCGTGGTGGTGTTCATGAGAATTGCATAACTTGCATCGTGCCATTGAGAAAAGGAAACGACAGTATTGTCA
AACGGTTCAGCACGTCAGGATTGGATGGTAAGATTGTGGTATGGGATGCAGAAAACCACATCGACATTAAAAAATAGCTC
CAGGGAAGGTTTCTGATCAATCACATCCAATGAACTTATATTGATGCATGGAAACAATGGCAACGAGCCCTGCAGGTTTT
AAAGATCCAGGGCTAGGGAGGAGAATGCTTGTTTTTTGTTGTACCTGTACACAAACCATTTCTTTAGCTGGCTCTTTAGC
ATAGAGGCTATTGGGATCTCTATAAGTTGGCTTCATTTTTTTGGGGAGTAACTCGGTCTTGAATTAATATTGTGTAATAC
CTGTAAAATCCTAGCTAGGCAATTACATAAATTCGACATCTCATCCCAAGTGTTTCGCGGTATTCTGTGTAAAATAACCA
CACGTGGAATTCACCCGAATGCTTTCACTTTTGNNNNGATGATAATTGCTCGTCATCCTGTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis