Browse Element(s) Details


Os.4806.1.S1_at

Description gb:AK069892.1
DB_XREF= gi:32979916
TID=Os.4806.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039N11, full insert sequence.
FL= gb:AK104802.1 gb:AK069892.1 gb:AK104501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5725011/11Auxin-responsive protein IAA13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57210OsAffx.12678.1.S1_x_at11/112+35047045..35048474hypothetical protein
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009880biological_processembryonic pattern specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4806.1.S1_at--733--5451Chr02:35068670..35068694 (25 bp)
GAACTCATGTTCACGAAGCCGTCCA
LOC_Os02g57250
Os.4806.1.S1_at--224--8431Chr02:35068394..35068667 (25 bp)
GGCCTTTGCGCTTCTCATAATACAA
LOC_Os02g57250
Os.4806.1.S1_at--464--5531Chr02:35068362..35068386 (25 bp)
GAAACTACTAGACAACTCTGCCGAA
LOC_Os02g57250
Os.4806.1.S1_at--442--931Chr02:35067823..35067847 (25 bp)
AGGCAGATCCTGAGAGCGTGTGACA
LOC_Os02g57250
Os.4806.1.S1_at--590--4831Chr02:35067699..35067723 (25 bp)
GCTCACCCGGTTCTGTTATATTTTT
LOC_Os02g57250
Os.4806.1.S1_at--124--232Chr06:5445533..5445597 (24 bp)
ATATTTTTGCCTTTGTGGTGCCTGT
NONE
Os.4806.1.S1_at--602--4471Chr02:35067663..35067687 (25 bp)
GCCTGTTTTTGTTTGCACTGTCGAT
LOC_Os02g57250
Os.4806.1.S1_at--568--471Chr02:35067640..35067664 (25 bp)
ATCTGCAAGAGCATATGGTCGCCTT
LOC_Os02g57250
Os.4806.1.S1_at--134--10271Chr02:35067568..35067592 (25 bp)
TTTGATGATGATCCTTGTGCCTACC
LOC_Os02g57250
Os.4806.1.S1_at--140--8691Chr02:35067553..35067577 (25 bp)
TGTGCCTACCTGATTACTACTGACT
LOC_Os02g57250
Os.4806.1.S1_at--832--5111Chr02:35067525..35067549 (25 bp)
GCACAGCCTCACAAATCTCTATGAA
LOC_Os02g57250
Target Sequence 
GAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGC
CGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCTCGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCT
CTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCAGGGAATTCACAGAACCATT
GCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGAT
GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCACCCGGTTCTGTTATATTTTT
GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGT
ATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCA
CAAATCTCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis