Browse Element(s) Details


Os.8733.1.S1_at

Description gb:AY224469.1
DB_XREF= gi:29367430
TID=Os.8733.1
CNT=112
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.8733 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 24733 3-ketoacyl-CoA thiolase-like protein mRNA, complete cds.
PROD=3-ketoacyl-CoA thiolase-like protein
FL= gb:AY224469.1 gb:AK061948.1 gb:AK069768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5726011/113-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57220Os.18424.1.S1_at11/112+35051067..35056660Actin-related protein 2/3 complex subunit 1B, putative, expressed
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010111biological_processglyoxysome organization and biogenesis
GO:0019395biological_processfatty acid oxidation
GO:0005739cellular_componentmitochondrion
GO:0003988molecular_functionacetyl-CoA C-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8733.1.S1_at--675--7791Chr02:35076258..35076282 (25 bp)
GGTCCTGCAGTAGCAATACCAGCTG
LOC_Os02g57260
Os.8733.1.S1_at--669--4711Chr02:35076222..35076246 (25 bp)
GCTGGACTCCAGATTGAAGACATTG
LOC_Os02g57260
Os.8733.1.S1_at--50--2391Chr02:35076030..35076054 (25 bp)
AAACGTGAATGGAGGCGCAATCGCC
LOC_Os02g57260
Os.8733.1.S1_at--147--7791Chr02:35075829..35075853 (25 bp)
GGTGCGTCGCAACTCTTCTGAATGA
LOC_Os02g57260
Os.8733.1.S1_at--873--6571Chr02:35075778..35075802 (25 bp)
GATTCGGTGTTGTCACCATGTGCAT
LOC_Os02g57260
Os.8733.1.S1_at--792--9671Chr02:35075647..35075790 (25 bp)
TCACCATGTGCATTGGATCTGGCAT
LOC_Os02g57260
Os.8733.1.S1_at--1018--7791Chr02:35075589..35075613 (25 bp)
GGTCGACCAATTCTCAAACGTGCGC
LOC_Os02g57260
Os.8733.1.S1_at--739--7291Chr02:35075570..35075594 (25 bp)
GTGCGCCACCATTAGCGGCAGTTTT
LOC_Os02g57260
Os.8733.1.S1_at--172--5031Chr02:35075524..35075548 (25 bp)
GCAGTGGTGCAAAATCATCATGGTG
LOC_Os02g57260
Os.8733.1.S1_at--239--4391Chr02:35075493..35075517 (25 bp)
CCAATGGAGCATACTCTGGCAGTAA
LOC_Os02g57260
Os.8733.1.S1_at--231--5531Chr02:35075443..35075467 (25 bp)
GAAACACGTAATCTTCTCCGGTGAA
LOC_Os02g57260
Target Sequence 
GGTCCTGCAGTAGCAATACCAGCTGCAGTGAAGTCTGCTGGACTCCAGATTGAAGACATTGATCTGTTTGAATTGAATGA
GGCCTTCGCTTCGCAGTTCGTGTATTGCTGCAACAAGCTGGGACTGGACAGGTCAAAAGTAAACGTGAATGGAGGCGCAA
TCGCCCTAGGACATCCTCTTGGTGCAACAGGTGCCCGGTGCGTCGCAACTCTTCTGAATGAAATGAAGCGCCGGGGCAGG
GACTGCAGATTCGGTGTTGTCACCATGTGCATTGGATCTGGCATGGGGGCAGCAGCTGTGTTTGAGCGGGGTGACTCGGT
CGACCAATTCTCAAACGTGCGCCACCATTAGCGGCAGTTTTNTAAGAGAAATGCAAAGCAAAGCAGTGGTGCAAAATCAT
CATGGTGGTCAGTCCAATGGAGCATACTCTGGCAGTAAGATCTATACCGAAAACTAAATGCAGGAAACACGTAATCTTCT
CCGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis