Browse Element(s) Details


Os.35294.1.S1_at

Description gb:AK068163.1
DB_XREF= gi:32978181
TID=Os.35294.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence.
FL= gb:AK068163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5729011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57230OsAffx.29218.1.S1_s_at8/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.380.1.S1_at3/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.29576.2.S1_x_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.2057.3.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57230OsAffx.13325.1.S1_at1/112+35057895..35061034retrotransposon protein, putative, unclassified
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016117biological_processcarotenoid biosynthesis
GO:0016131biological_processbrassinosteroid metabolism
GO:0009507cellular_componentchloroplast
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0009974molecular_functionepsilon hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35294.1.S1_at--700--4551Chr02:35085812..35085836 (25 bp)
GCCCAGGTCACGTGGCAGTGGATAA
LOC_Os02g57290
Os.35294.1.S1_at--1142--6411Chr02:35085783..35085807 (25 bp)
GATCATCCTGACCTTTGGTTTGGTA
LOC_Os02g57290
Os.35294.1.S1_at--233--10311Chr02:35085711..35085735 (25 bp)
TTTCTTTCGCCGCTGGAAAACAGAT
LOC_Os02g57290
Os.35294.1.S1_at--442--5531Chr02:35085696..35085720 (25 bp)
GAAAACAGATAGCTCGCCGTGTTAG
LOC_Os02g57290
Os.35294.1.S1_at--750--7571Chr02:35085669..35085693 (25 bp)
GGGCGATCGATCTTGGATGCTTCGA
LOC_Os02g57290
Os.35294.1.S1_at--882--7431Chr02:35085640..35085664 (25 bp)
GTGTATGCATCTGCCAAGTTGCTTG
LOC_Os02g57290
Os.35294.1.S1_at--1050--8971Chr02:35085614..35085638 (25 bp)
TGAACTTGCAGTCGAGCTTGGCCGT
LOC_Os02g57290
Os.35294.1.S1_at--878--1531Chr02:35085600..35085624 (25 bp)
AGCTTGGCCGTTTGCTGTAGATTCA
LOC_Os02g57290
Os.35294.1.S1_at--925--7351Chr02:35085559..35085583 (25 bp)
GTGAAAGCTACTACTCCTACAATGG
LOC_Os02g57290
Os.35294.1.S1_at--287--991Chr02:35085385..35085409 (25 bp)
AGGATAATTCTCAGGGTAGACCCCA
LOC_Os02g57290
Os.35294.1.S1_at--969--7091Chr02:35085355..35085380 (25 bp)
GTCACCGCCTGAATGTTTGTGCTTA
LOC_Os02g57290
Target Sequence 
GCCCAGGTCACGTGGCAGTGGATAAGCCGGATCATCCTGACCTTTGGTTTGGTACTGAGTACCGACCGGCCGGCCGGTGA
GCCGACTCGCCGTGCCCGTGGTTTCTTTCGCCGCTGGAAAACAGATAGCTCGCCGTGTTAGNGTGGGCGATCGATCTTGG
ATGCTTCGATGCTGTGTATGCATCTGCCAAGTTGCTTGCTGAACTTGCAGTCGAGCTTGGCCGTTTGCTGTAGATTCAGT
GCTAGATGCATCAAGTGAAAGCTACTACTCCTACAATGGAACGGGAGAAAAGAACTGCATCATAAGGGGAATATGATTTG
TGTTAGTTGACTTCTAATTTCTTGAGAGATATTTTCCGATTTATATTAATTAACTGTAGCGTAAACTCAAAGTTGCTTGT
GCATGGGTNCCTGAACTTCCAAGTTCTTAGGATAATTCTCAGGGTAGACCCCATCTTGTCACCGCCTGAATGTTTGTGCT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis