Browse Element(s) Details


OsAffx.12679.1.S1_at

Description tigr:9630.m05708
TID=OsAffx.12679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=selenium-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5734011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed
LOC_Os02g57350Os.55392.1.S1_at11/112+35124805..35126008heavy metal-associated domain containing protein, expressed
LOC_Os02g57360OsAffx.24905.1.S1_at11/112+35127243..35129219heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12679.1.S1_at--158--1331Chr02:35119089..35119113 (25 bp)
AGAGGCATGCCCTTGCATGGACAAT
LOC_Os02g57340
OsAffx.12679.1.S1_at--119--651Chr02:35119118..35119142 (25 bp)
ATGCATTTGCAGATCTTGTGAACAC
LOC_Os02g57340
OsAffx.12679.1.S1_at--588--2471Chr02:35119138..35119162 (25 bp)
AACACTGGCAGTGCGTTCTCTAGCT
LOC_Os02g57340
OsAffx.12679.1.S1_at--951--3711Chr02:35119157..35119181 (25 bp)
CTAGCTGTGGTTTGCCTTTTGTATA
LOC_Os02g57340
OsAffx.12679.1.S1_at--1076--3651Chr02:35119172..35119196 (25 bp)
CTTTTGTATACATGGTGCACGCGGA
LOC_Os02g57340
OsAffx.12679.1.S1_at--686--3731Chr02:35119199..35119223 (25 bp)
CTAAGTTTGTGCTCAGTTCAGTAAA
LOC_Os02g57340
OsAffx.12679.1.S1_at--687--2771Chr02:35119224..35119248 (25 bp)
AAGATCCAGAAGTCCCCAGGTTAAT
LOC_Os02g57340
OsAffx.12679.1.S1_at--485--10331Chr02:35119322..35119341 (20 bp)
TTTCAGGGCTATGTTCTTCCTGGCA
LOC_Os02g57340
OsAffx.12679.1.S1_at--579--5691Chr02:35120119..35120143 (25 bp)
GACTTCTGTATTCAGCGTTGACATA
LOC_Os02g57340
OsAffx.12679.1.S1_at--976--7951Chr02:35120193..35120264 (25 bp)
GGATCAGCCTTTCAGAAGTGGTGCA
LOC_Os02g57340
OsAffx.12679.1.S1_at--395--8611Chr02:35120258..35120282 (25 bp)
TGGTGCATATCTTCTGCTTGCATTT
LOC_Os02g57340
Target Sequence 
AGAGGCATGCCCTTGCATGGACAATGGTGATGCATTTGCAGATCTTGTGAACACTGGCAGTGCGTTCTCTAGCTGTGGTT
TGCCTTTTGTATACATGGTGCACGCGGAAACTAAGTTTGTGCTCAGTTCAGTAAAAAGATCCAGAAGTCCCCAGGTTAAT
CTGATAACAGAAGTCATGGCTTCTGAAATTACTGCACAGCAGCCCAGAAGAAAAAAAAAGGTCGCAGGAGAATTTTCAGG
GCTATGTTCTTCCTGGCAAGAACGTTGCAAGGCTAATGGGTTAAAGACTTCTGTATTCAGCGTTGACATACACTGCAAGT
GCAATGGCTGCATCAAGAAGATCAATGATGGTATGAAAAGGATCAGCCTTTCAGAAGTGGTGCATATCTTCTGCTTGCAT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis