Browse Element(s) Details


OsAffx.3092.1.S1_at

Description tigr:9630.m05702
TID=OsAffx.3092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57330OsAffx.24904.1.S1_at11/112+35114296..35116876expressed protein
LOC_Os02g57340OsAffx.12679.1.S1_at11/112+35117042..35120427pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3092.1.S1_at--342--10611Chr02:35094848..35094872 (25 bp)
TTCTGGCTGCATTCGATGACTTGGA
LOC_Os02g57300
OsAffx.3092.1.S1_at--189--1911Chr02:35094811..35094835 (25 bp)
ACGTGTCAATGTCTTCCTTCGAAAA
LOC_Os02g57300
OsAffx.3092.1.S1_at--222--6671Chr02:35094776..35094800 (25 bp)
GTTGCATTGGAATCATCTCTTCAGA
LOC_Os02g57300
OsAffx.3092.1.S1_at--39--4211Chr02:35094747..35094771 (25 bp)
CCCCATGCTCTTGTACAGTTTGTAC
LOC_Os02g57300
OsAffx.3092.1.S1_at--534--6211Chr02:35094717..35094741 (25 bp)
GAGGCTGCACTTGGATTCATCTCAT
LOC_Os02g57300
OsAffx.3092.1.S1_at--426--7951Chr02:35094662..35094686 (25 bp)
GGATATGGAGACTGTTTCCTGTGTT
LOC_Os02g57300
OsAffx.3092.1.S1_at--732--10291Chr02:35094651..35094672 (22 bp)
TTTCCTGTGTTATACCTACCAGCGT
LOC_Os02g57300
OsAffx.3092.1.S1_at--927--4291Chr02:35094538..35094658 (25 bp)
CCTACCAGCGTGTTCCAATTTTATA
LOC_Os02g57300
OsAffx.3092.1.S1_at--666--1991Chr02:35094495..35094519 (25 bp)
ACTCCAGGACAAATGCTGTTTGCAC
LOC_Os02g57300
OsAffx.3092.1.S1_at--485--3011Chr02:35094457..35094481 (25 bp)
AATGCCAATACCATCCAATTCACGG
LOC_Os02g57300
OsAffx.3092.1.S1_at--96--131Chr02:35094440..35094464 (25 bp)
ATTCACGGTATCTTGAAGCCCCAAC
LOC_Os02g57300
Target Sequence 
TTCTGGCTGCATTCGATGACTTGGATGATGGAAATGGACGTGTCAATGTCTTCCTTCGAAAACTTGCAAAGAGTTGCATT
GGAATCATCTCTTCAGAGAGCCCCCATGCTCTTGTACAGTTTGTACTAGAAGAGGCTGCACTTGGATTCATCTCATCTGA
ATGTTCAATTGGAGCTGCAGCTGATAGGATATGGAGACTGTTTCCTGTGTTATACCTACCAGCGTGTTCCAATTTTATAC
TCTGGCAACAACATCCAACTCCAGGACAAATGCTGTTTGCACTTGAAGGTATAAAAATGCCAATACCATCCAATTCACGG
TATCTTGAAGCCCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis